MmuINT0066451 @ mm10
Intron Retention
Gene
ENSMUSG00000028034 | Fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:MGI Symbol;Acc:MGI:1196294]
Coordinates
chr3:152223286-152226217:+
Coord C1 exon
chr3:152223286-152223365
Coord A exon
chr3:152223366-152226079
Coord C2 exon
chr3:152226080-152226217
Length
2714 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TCTTTGTTTTTACATTGTAGCCA
3' ss Score
7.92
Exon sequences
Seq C1 exon
CGGTCCTCCAGCCCCATATGCTCCCCAGGGATGGGGAAATGCGTATCCACATTGGCAGCAACAGGCTCCTCCTGACCCAG
Seq A exon
GTAAAGGGTAATCTACTATTAATATGTTAGCTTCATTGTATACTGCTGGTCACAGTCCTAAACTACCTACTGCATGTGCGATCTTTTAAGGCACTTCCCCTGCAGTATAGGATGACACTGCTGTCTAGTATGTTGTGACTTTATTCATAGTAGTTCATATTTATAAAATAATGTGTTTAACACTACTATGTTCTCAAATAATAAGTATAAATTATTTTGTTGCTGATAAAATTAAGGTCCCTTAATTACCAAAACAGGAGAGTACATTTATTTTTCTCTCTTATAATCTGGATTTTCTATAGCATGGTGTTCTCATTATATCTTCCCATACTGGTTTTGTTTCTACTCCATCATGATCAGGAATCAACTTGGAAATAGGACTTTTTTCTTTGTTTTTCTTTTGTTTTTTCACTTTGCAGCCCCTGTAGTTTGATTCATTTGAAAAGTTTGAGAGAACGTGTTCTGAGTTATAGATTTCTACATAGTGTATTTTTTACAAATCAAAGTTGATTTAGATGTAATTGCTTTGTTGGATTTGTTAAATGTTTTAATATTTTAATGTATGTTAAATTCATAGGAACTTTTCTCAGTCACCAAATAACCACAACTTCTATTCATTTAAGAAACAACTTGAGCCGGGCGGCAGTGGTGAACGCCATTAGTCCCAGCACACAGGAGACAGAAGCAGGCAGATCTCTGAGTTCGAGGACAGCCTGATCTACAGAGCATGTTCAAGGATAGCCAGGGACACACAGGAAAAATCCTATCTCAAAAAAGAGAGAGAGAGAAAAAAAAAGAAAAAGAAATAACTTGAATTGTGATGGCATCTGAATATGAAAGATGAGTGTCGATTAGCAAAAGAGTGCATTCCCAGGGCAGACAAGAAGCATCAGTTATGACTTCCTTTGTAAGGGTTTTAAAAGTGAATCTTCTCCTTCTAACAAGCATTTAGACGTGGCATGATCAAATAGAGTTGGAACAGGTTATATTGAAGGTTTTATATGGCTAATTCAATTTCATAGGATTGCTCAAATGAGTGATGTTTGATATTAGCACTGTAAGGTCTGGTCAGTGAATATGACTTCCAGCATTACCTGGAAGACTGACTCGGCAATATGTTGCTTAAATTTGACTTGGAAGTATACAGTATTTTATTGTCTGCATTTTCAAGAAACTGCTGCTGTGAGGTTGAGATTTATATAGATGTCAAGAATTTAATCTTCAATCTTAAATGGATAATATGCGAATTCATCCTATGTAAAAGAATAGTGAGCTCTTAGTACCTGCTAGTTGCAAGTCACAAAAAAAAAGTTTGGGTTTTGGTTTGGTTTTTGAGTTACAAAGGTGAGCTTAGTGCAGAGGATGCTGGTTGTGGTGACTTGGGAATAGGGCAGCAGCTAAAACTTGAGTATTGGGGGATGCTAAAAGAATTAATAGAAAGGATAAGCCACAGTGCTGGGGATAAGCATTAGAACCTGAGTTCTATCCCTCCCACCTGTTGTAAAGAAAAATAAATAAAGCGCTTTAATAAAGTTCGTAAAAAGGATCCGTAAAGTTTCCTGGCCTGCTCTTGTAACCAAATCTAGGAGCTCTGGGTTCAGAGAGAAATCCTATCTCAAAAAAAATTAGGAAGGAAGGCTGGAGAGAGGGCTCAGTGGATAAGAAAAGCAATAACTGCTCTTCCAGAGGTCTGAGTTCAATTCCCAGCAACCACATGGTAGTTCACAACCATCTGCAATGGGATCTGATGCCCTCTGCTGGTGTTTCTGAAGAGAGCTTCAAGTGTACTCATATACAAAATAATAATAATTCTTTTAAAAAATGAGGAAGGGTGTCAGAGAGGTAGCTTAGTGATTATTATAAAGGTCTTCCTGCTCTTTGAGAGGATGCAAGTTGAGATCCAGTTACTCTCACACCTTCTGGTTCTCTTTAGTAACCCACATTTGTGTAGATACACACAGGTTCACAGATACACATAACTAGAAGTGGGACTTTAAAGTCTAGATAAAACAAGGTGAGCATGTCTAGGGAGATCACCCAGAATCAGTACACACAAACAGACACGCCACGACACGATGGCTAAGCTGGGGAGGGCGGCCAGACCACAGCATGTAGCCCGGAAACAGGAAAAGTGGAGGAAGAAAAGGTAACGGCTTGGAAATCCAACGGCCTGTGTTAAATGGGGCATGGTCTTAAAACTGTACAGGAGCTTTCAAATGATAAGCTATGCTTGAAGTATCCTAAAGGTGTTAGAAAAGGATAGAGCAGGACTTTCAGGATTGTGACTGAAATAAATATAAACTGCATGTATCTAACCTTTGTTTCTTTCTTGTACAAATTAGTCCATAACTGCCTGCTATACAGAACTGTTGCACTTGGCAGCTTAACTTGTTGGGGGAAAAAAAGCAAAGACACGGGATTGAGCTGAGACAAACCATTGGATTGGAAGCCAAAAGATCATCCATTTATATACCAGTTCCACCGATCACTAGTAAATTACTTAATACCTGTAACCTAGGAAATTACTTAATTCCCGAGGCTGAAGTTTCTGAACTAAAAGCCAAGTGATGATGATAATACTAGAACATTTTGAAAGTTTCCATTCGCTATTGGTAACTTTTGAGCCTATTTGTCAGGAATCACCAAAAAGGTAAGGGTTGGTTTCTAGAGTTTACATATTAACCTTGAAACCGCTCTTTGTTTTTACATTGTAG
Seq C2 exon
CCAAGGCAGGAGCAGATCCAAACTCGGCAGCTTGGGCTGCTTATTATGCTCACTATTACCAGCAGCAGGCACAACCCCCACCTGCAGCTCCTGCCGGTGCACCAGCTACAACCCAAACGAACGGACAAGGTAACTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028034:ENSMUST00000166984:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.975 A=NA C2=0.689
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types