GgaINT1013533 @ galGal4
Intron Retention
Gene
ENSGALG00000008939 | FUBP1
Description
far upstream element-binding protein 1 [Source:RefSeq peptide;Acc:NP_001006535]
Coordinates
chr8:17802841-17806030:+
Coord C1 exon
chr8:17802841-17802937
Coord A exon
chr8:17802938-17805906
Coord C2 exon
chr8:17805907-17806030
Length
2969 bp
Sequences
Splice sites
5' ss Seq
ACAGTGTAC
5' ss Score
-10.2
3' ss Seq
TATTTTATTTCACAGGAAAGCCA
3' ss Score
-5.19
Exon sequences
Seq C1 exon
TGGTCCTCCAGCTCCGTATGCTCCACAAGGGTGGGGAAATGCTTATCCACACTGGCAGCCACCAAATCCACCAGATCCAGGTAAGGAATGGAGCACA
Seq A exon
GTGTACTGTAGCGTGGTAAACTTCGAGCGCGTTTGTTTTGTCCTTACAAGTATATGCATTCTTAATACATGTGTTTCACTGGTAACTCTGAAAGGCTTTTCTTTACAGATGGTCAATTTATGTATGTTCTATACTCCCCCCTCTCCCTGTTTCTTGAGATGTTCAAATTTGGTTGTTAGAGCTGGAATGTGCTTCTTCATTAAATGTTATTGATCTTGCATCCCAGTTTATGATACTTCTTGTGAGGTGCTTGGTTATCTGATCTTGTGCAAATCCATTCTTTTTTTCTTGTAATGGAATATGATTAGCTTTTATGTTGTTACATAAAGTTCTTTGAGAATGTGTTTTCTTTTTCAGTGCTCAATGAGTTCTCATTTTATTTTGAACAGCCTCCCTGATCCTGACTTTGAACAGTATGCTGTATTGTGTATTTCTAGCTTTTGTTGACCTATATGAGGTTGCTCTTCAGAGTCTGGTACAAATATATTTTGTTCAGTCCTTTTTGAGGAATGAAACTTCTGTTGTGCTGTTCTTGATACAATAAAAGTACACAGGATTATGTATTTTGAGGCTTTGTTATAATAGTTCCGTATTTTCTTTGAAATGCATCTTTGTAGGATCTGTTTTTTCTGTGTCTGTTTATCTTTGTCAAAATCAGGAGTTTTTTCTTAATTACAACTTCTGAAGTTTTAGTCTCCTGCTTTTAAGTTGCATCCTTTGGTTGGACTAAAGCAAGTCGGGAATCTCAACTGCACTCGCAGAAGGCATGGTAAGGCTAGATGCTTGAGTCACTTATACCTCATTTGTTTGAGGCAGGTGTTCTTCAGAACTTCAACTGAATGATTTCAGTTTTCTTTTTTGTTAAAATTGCATACATCATTTTCTGATAGCCACTGATCCTGGAATGAGTGGGAAAAGATAGGACTTCGGAAGATGTTACGATCTAGAGTTCTGTTCGTATCGAAGTCTTTTATATAGCTGCTCTTGGCAAAGAACCATCTGTAGGTTCAGTTCCTAAACTCATATGGTAACTTTGCATGTGTTCTGTTCTGTATTAAAAAATGCCTGTTGCCAGTACTTGAAAGTAGAATGATTCCGGGTGACTTGACCTGAAGTCTCAGCCTACCAATTGTCATTTAATCCAAAACCATTGCCAAAAAGTTAGTCTTTTTCATTACCACCTTTTCATGATTTTATGAAGAAAAATGGCAAATACTTGTCTTGATAATTTTATTGCTGTTTTTCAGGTAAATACTTGTCTTATAAATCTAATGAAGTTTTCGTTGGTGCAGTTGAAGTTGGTGTTTCTTTTGACTAGCTTTTGCTTGAACAATTTCTATACAGGTGTCCACAGTCACTCATTTCAACACAACATATGGCTGTTTTTTTTGGTGTGGTTTTTTTCCCCCAGATTCTTCCTCCATGCCATGCTTGTATTGTTGCATGGTAGTGGAGCTACTTACTACAGTCACGTTCTTTGGAAATTCAGTGAACTGCACATTGTGATCTTTTGTTCTGGAGCAATAGCTATAAAAGGCAAGGGGTGGGGGGTGGAACCAAGCAATTGCTTATTTGCTATTTCCAGGTAACCTTAGAATCCTACATATTAGCTCTGTGTTAAATGAGGCTGTGTGGTATTGGCTGCATCTGTCATGAGTATACTGTTCTTTGTTTATCCAAGCAAGCTGTTCAGTAGACGTGGTTCCTTCTGCTTTTACGTTTAGTAACGTGTTAAGCTGAGTATGCAATTCTTCTCTTATGTGGAAGCATTTCTGCAGTGAGCACATGATAGGTTATCCTTTGACAGTATCCTCAGAAAAGTTAAGCACAGTCCCACAATGTAGTAATATTGCTTAAATCCACAGTTGTCAAAGCTAGCAGTGTAATTTAAAAGGGGAACAGCCAACTGTTAACTTTGCTTTCTCTATGCTGATACTACTGTATGCATATTGACTGGTTACATCTGACTGCTTAATGCAATACTGCATGAAATTTGTTGTGTTCTGGTTTTCATGTCTCTGATGTTTTTTCTCAGGGAATTTCTTCTTTCTCTTCAGTCAGTCACTTGCTTAGCTATTTTTGGTTTGGGGAAAATATATTTTTGTTTCCATAGTAGTTCTCCTAAGGTGTCATTTGTGTATGTGGTCTTGTGTGAAATTTTTCATCATTTGGCCCCAATTATTCACAGATATTTATGTTCTTCAAGGATGCAAATCATACTAAAGGGAGCCGGTCGTGTTATAGAACATCATGGTTTCTAATAGCAGATATGAAATCTTTGCGGATTGCCAGTGTGTTAATGTAATCAATCTCTGTGTGATTCAGCAAGAAGAATAACCGTTCCTACAGGCTATATGTGAGAAACATTAGAGAAATAAGACTCTAGGAAGCAACATCATTGGCCTACCTAGATGTAGTTAAAAATAAGGAAAGCATGGAAATAGCCACAGAAGATGCGAATGTTGCAATCATTGTTTTACTAAAAAGCTGTAAGTAAACAGTGATGCTTTATAGCCACATATGGGAACCCAGGTTCTTACAATACTGTTTCTGTATTTTATTGTTAAAAAACATTGCAATTGTCTTACTTTTGCCAGTATTGTGGGTGCAAGGCTATAATGAGAGTGAAACCATTGAAGTTTGCTGATAGAATGATTCATGGTTGCAGCTGTTCAGTAACATGACTGTTTAAATAAATTCTAATATGTTTCTGCTTAAAAATTTTTTCATAAATGATGCTGTAGCAGCATGGTTTCTAGAAAGGTACTGTCTCAGCAGTCTTGTGAAAGTGTGCTTTATACGGTGCACTTATATGAAACCCAATAGAACGCTTGTGCTAGAAAGGAAAAATGGAAGGCTGACGTGATTAATTAAATGGATTTTTCTTTGGAGGAAAATAAAGGTGCGTAGGATAGGGCTAATTGAGAGCAGTGTTTTCATAAGTGCTTATATTTTATTTCACAGGAAAG
Seq C2 exon
CCAGGAACAGATCCTAATTCAGCAGCATGGGCAGCTTACTATGCTCACTACTATCAGCAGCAAGCACAGCCACCACCTGCAGCCCCTCCTGGTGGACCAGCTACAACCCAAACCAACGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939:ENSGALT00000014525:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.690
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]