HsaINT0066537 @ hg19
Intron Retention
Gene
ENSG00000162613 | FUBP1
Description
far upstream element (FUSE) binding protein 1 [Source:HGNC Symbol;Acc:4004]
Coordinates
chr1:78422257-78425948:-
Coord C1 exon
chr1:78425869-78425948
Coord A exon
chr1:78422386-78425868
Coord C2 exon
chr1:78422257-78422385
Length
3483 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
3' ss Seq
TGAACTTTCATTTATTTTAGCTA
3' ss Score
8.44
Exon sequences
Seq C1 exon
TGGTCCTCCAGCCCCATATGCTCCCCAGGGATGGGGAAATGCATATCCACACTGGCAGCAGCAGGCTCCTCCTGATCCAG
Seq A exon
GTAGAAGATGCTTATTATTTGTGTGTTATCTGTATTATTTTCCACTCCTGTTACATTATTAAATTTTCTAGTGTTGATTCTACATTTGTATGCATCACCTTCACTCACTTTACTCTTTCAACAGTGTTAGGCACTGCCTCTACCCCAGTGTATAGGACTGACATGAATATGAGCTCTGCTTTTATGGAATTTCTTTCTACTTGCCTTTGGCTTATGAGTTGATACAGTAGAATGATAAAAGCTAAAAGCTGCAGGAAAGAGCACAGTGTCATAGGTTTTGGATACCAGTGCTGTCAAATGTGTAGTATGTTCATTGTGACATTATCTGTGGAAAAATAGTTTTTACTTATTTAGAAAAGTATGTGATAGGGGCTGGGCACTGAGGCTCACGTCTGTAATCCCACCTATTCAGAAGTCTGAGGCTGAGGCTTGAGACCAGCCTGGGCAATATGGCAAGACCCATCTCTAAAAAAATTTGTTTTAAATTAGCCGGGCAGGGTGGTATGTGCCTGTACTTGAGGCTGAGGTGGGAGGATTGCTTGAGCCTAGAAGTTCTAGATTGTATTGAGCTGTGGGCACACCATTGCACTCCCCTGGGCAACAGAATGGGATCCCATCTCTTAAAAAATTATGTATATATGTAACAGTCTATATAAATATATATATATAACAGTCCAACAGAGTGTTAAGTATTGGGGCATTAAACTTCCAAATTGTCAAATAAGATATCTGTTCTAGTACTCCTCATATGACAACTTCATGTGAGTAAAAATCAGGCCTGTATTTAATAACTGCATGCTAAAGCCCAAATACGTTTAATTATTTTCTATATTCAGATTTATTTTTATCCTATTATATTCTGGCATCTTTCCATACCCTGTAGTTTGCTTTCCATCTTGGTCAAAGAGTCATTCTTTGAAACCAATTAACATTTATTTATGATCCTTTTTTCTCACCTGCTACCTACCTTTTAGGCCTCTTTCACTCGTGTAGTTTCAAGGAAAATATACTCAATTATGGAATACTTTCTACACATAATACATTTATCCCAAAAAAACTTGAAGTAATTTATGTAAATGAAATTGCTTGATTAACTTCATAGGAAGTGTGCTGTTTGGAATATGATGACACAGCATGACAGTTACCAAGCATGACTTGAGTTGTGCTAGGATATAGGTGTGCAAAGTTGGGGTTGTGTTCTATAGCAAAAGAATGCACTCCCAGCGTAAGCAACACTGATGGAAGGGGCTCACAGGGTACAGGATATAATACTCTTAACAACTAATTTTTGGAGAATGAAAGGGCTTTTCTTTCCCTCTTGTTGGCTGATTGGGATGGTATAATTAATGGGATTGAAGAGTTTGAGTAGGTTAAAAGGCAGATTCATATTGGGTAACTTGGATCTGCCAGGATTGTATTTTTGAGCACTACTGGGTGGTTAGCATGATTGAGGAAAAATGATGGGAATAAGAAGTGGAAGTGGTCTTTGTATCACAAGTTGAATTTCTCACTTGGAGTAGTAGTGAAGTCACTACTGTAAGAGCTGGTCAGTGAATGTGGTTGCAGCATGGCCTTTGGGCAAGAAGTAACCCATTTAACTAAAACCAGCTGGTTGGCCCCACTCAGATTTATCAAAGGGTTACTGGGTCCCTGGGGGTGGATATTGCTTATATTAGACTTAGAATAGCATACTGTTTTAATATTATATGAACTAAAATGTTTCTTTAAAAAAAGAGTGGTCTGTTAATGGATTTATGTAGTGGTCAAGAATTTAGACTTCAGAGTCAAATAAACCTATATCAGTCCTAGTCCTACAGTTTACTAATTGTGAGATGTCAAGCAAGTTTTTGAACTCCTCTAAGCCTCTGTTTTCTTATCTATAAATTAATAAATGAATGAATCGGGTTGAGTGAATATTTAGTAAATTCTTAGTACATACTAGTTATTTGTAACTGTGAGACTGGTTTTTTGGTATGGTTTTCACATTTGGGAGTAGAAATACCACTTCCTAAAGTCTGTTTTATCTCAAATTCTCTATCCAGGCATAGTGTAAAGTGAAATACCTAGATTTCTTGATTAATATACAGATAATGGCCAGACGCCATGGCTAAAACCTGTGACGCTAGCACTTCGGAAGGCTGAGGCGGGCGGATCACTTGAGGTCAGGAGTTGGAGACCAGCCTGGCAAACATGGCGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGATGTGGTGGCAGGTGTCTGTAATCCCAGCTACTTAGGAGGCTGAGACAGGAGAACTCCTTGAGAATTGCTCCACTGCCCTCCAGCCTGGGCAACAGAGTGAGACACTTCATCTCAAAAAAAAAAAAAAAATACAGATAATGACACTATTGAGATATGTAAACATCCAACATAAAAAAGCAGTACATTGGGCAATTGAGAAAAGTTTGGCAGGTGTCCTAATAACACCTTACAATTATATTACCTTGCAATTTTCTTTTTCTAGAAATTCTTGCTCATTTTTCTCAAACTTGACTAACCTTTATTAAGCAGCTGAGAATTGCTACTGTTCAGAATGAAGGTATAATAGAAAATTTAAAAGTTTTAATTGTATGGTATTCCTAGTATAAAAGACAATCAAGTTTTTTCTGGTTTCTAGAAGATTGAAAGGTCTCAAACTGTTCGCACTTCAGTTGATGTGGGAGATGAGTGAGGGTCAGTCAAGTGTAGAGGAGACAACATAGCTAAAAGCCGAGACACGGGCATAGTGATTTCTGAAAAGTACAAGCACTGTGTTGTGGCTGGAGCTTGGGTGTTGAAGAGATACAACCAAAGGGAGAGATGAGGCTGAAATGGAAAGGATAAGCCAGGGGCTTCAGGCTGTTAAAGATGTTGAATGATAGGCTGTACTTAAGCTTTGAACATCCTGAAGATTGCAGAGAATGAAGAATTTCAAGTAGGATGACATCAAGTTTATAACATTCAATGTGAAATAGGATGAAATGTGGCTAATCTTTTTTAAGATTTTTATATTTTCTCTTCATTGAAAATAAGGACAAAGTTCATTGTTCTAAAATAATTTTCTTTCTTATACAGGTTAGTCCCTAGAAATGTTTTTCTTTAGTCATCTTCTAGATAGAGCTGTTTGTGCTTGAGGCGAAACCAATTTAGAAAAAAACAAGGGCACAGGATGGTTTGAGACAGAGCATTGGATTTGGAGCCAAAAGACCTTTATTCATATCCCAGTTATGCCACTCAGTAGTTTTTAACCTAGGAAAGTCACTTAGTCTCTGAGACTTGGTTTTCTTTAATAAAAGCTGATGGTGACAACAAAAATAATAGAAAATTTAAGTTTTCATATACTTTTTTTAATGTTCTAGTTAATTTTGGGGGCTGTATATTTGCCAGAGAGCTGGGCGGGGGGGTGGTGTGTGTGTGTGTGAGAGAGAATTACAGACTTCACATGCAAACCTTGAACTTTCATTTATTTTAG
Seq C2 exon
CTAAGGCAGGAACGGATCCAAATTCAGCAGCTTGGGCTGCTTATTACGCTCACTATTATCAACAGCAAGCACAGCCACCACCAGCAGCCCCTGCAGGTGCACCAACTACAACTCAAACTAATGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162613-FUBP1:NM_003902:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.824
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF090055=DUF1897=PU(78.6=31.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)