GgaINT0039346 @ galGal3
Intron Retention
Gene
ENSGALG00000005180 | COL11A1
Description
NA
Coordinates
chr8:12005990-12006625:+
Coord C1 exon
chr8:12005990-12006043
Coord A exon
chr8:12006044-12006517
Coord C2 exon
chr8:12006518-12006625
Length
474 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
TGTTCATGTGTTTACTATAGGGT
3' ss Score
9.05
Exon sequences
Seq C1 exon
GGTGAACCTGGAGAAGCTGGTAATCCTGGACCTCCTGGAGAATCTGGAACATCT
Seq A exon
GTGAGTCATTTGGTTTTGTCTTACTAACTTGTGTCACAGTAAAAAAAGACATAAGGTAGTGCTTACTTTAAGAAACATTTAATGAGATTACTTGTGTTTTTGTGTTTAAATTTTCAGTGAAGAACTTTCTTACACTTTTGAAATTTGTTTTTTACAACTGTATAACTATAAGTATAGCCACATCTCATAGCAAGATGTGGCAAATCTGTGAAGACTTCCTAAAAGAGTACTTGCTTTGATATGCATATTTTTTTCTCTATAGAAGCAATTCATTGATGCAGAATAGGTTCAGACTCACATGTGGTTGCAGATGTTTGCACTCAGACCTGGGGCTGAGGGCCTAATTTCCCATTCACATACCAACATTAATGAGGAATATCATTGCCCAGATCTGAAAAACAGTTTTGCCACTGTAATTTTTCTTTATACATTCAATTTCCAGACAATATTTTATTGTTCATGTGTTTACTATAG
Seq C2 exon
GGTCCAAAAGGTGAAAGGGGAGAAAAAGGTGAGGCTGGTCCACCTGGAGCAGCTGGACCACCAGGTGCTAAAGGACCTCCAGGTGATGATGGGCCTAAGGGTAACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180:ENSGALT00000008321:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]