GgaINT0039462 @ galGal3
Intron Retention
Gene
ENSGALG00000005935 | EVI5
Description
NA
Coordinates
chr8:14761938-14765420:+
Coord C1 exon
chr8:14761938-14762167
Coord A exon
chr8:14762168-14765230
Coord C2 exon
chr8:14765231-14765420
Length
3063 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TGTATGTGGTTTCTTTGCAGGCT
3' ss Score
9.35
Exon sequences
Seq C1 exon
GTGGCGACAGACAAGGTTGCAGGAAAGCTGAGCTCTACTCTCTCATGGGTGAAGAACACTGTATCGCACACCGTCAGTCAGATGGCCAGTCAGGTGGCAAGTCCATCTGCCTCCTTACACACTACATCCTCCTCTACCACTCTGTCTACACCTGCGTTATCACCATCCTCACCAGCGCAGCTGAGTCCAGACGACCTAGAATTACTGGCTAAACTTGAGGAGCAGAACAG
Seq A exon
GTAAATGCAAAACTTGATGATCTACAGACTATAGAAATAAGACTGAATTGGTTTATTGTGGCTTCAACATTGAGACTGTTAAAGGAGGTTGCTGTTCATGGCACAACACCTTAATTTCAAGGTTAAGAATTAATGTTCTAGAGATGTATATTCTTGAAGGTCTGTCTTTGTAGAATGTTCAAAAGTGTTAGCTCTCTGGCTTTAAAGAAGTGCTTACAACTGCTCCTTATTCTAGAAATTTATGTTGGAGTCACATGATCTTTAGTATCCCAACTGAAATGGAATATAGGAGTGAGACTTCTGTATAAGTTCCTCACATTCTTAGATAAAAACGGTGTTTTTTATAGGCTTTTTGAAATGTGAAGTACCTCAGAATTTCCTTGTTTTCCTTCTTAATTTCTACTGTACAACCTGCTCACATGTAGCCTTTTAGCATGGTATCTGTTTACCTATGATTATGTACGTGGAGCAGGATTTTCTGTTGGAAATACTAGAAAGGTGGAAGCTGCTATTTAGTGCTGCTATTTAGTTTGGGGGTTTGAGCAGAGTTCTTCAGTTTGTTTCCTGTAATGTAGAGTGCAGCTCTGGTTATTTTGTACAGGTACAGCTAATAAGGGAGGCTTTGCAGTTTCTTCTGTGTTATGGCTGGAGGCCTATTCTTAGAGATAGAGCAGTGTTCAAGCATGTTTTATATGCAAGGAATAATAGGTGCATGCTGCTGTTATGCTAATAGTGACAGGTACGTAATGACTTAATTTCATGAAAGATGAATCTCTAATCAGTCATTCCTGTTTGTCCTGAATTTTTTTTATAGGCTGCTGTAACTGAGAAGAGAAGGTAATGCCAACTGTCTCCTGGCATGTCTTCTCTTAATGTTCTGATTCTGCAGCCTGATAGTAAAGTAACTTACAAGGAAATTATAGCTGTCTAGTTCGTGACTGAGAATGGAAGTCAGCTTTTAAAACATGTGGTCTTTCTTTCCTTATGGTTTATGGGATTATCTTTCATTTGAAGATGTTCTATGATTTTTTTGCTATACTAGGAACCATTTAAAATTTATCAAAAGAAGAAAAAAGGATGTAAATGGAGTGCTTTTAAGAAAACTAATTTGCTTCCTTAAATCTGAGGCTTTCAGTTCTGTTTATGACCAAGGGTCTCGTTTATATTTGGAGAACTATAATATCTGTTCTTTGGACTGCTTATCTATGTTAGGGCGTAAGATTTCTACATACAGAGTAGTTATATTAAGCCCTGCAGTTAAGTTAGTTTGCATTTTCAAAGCTTGTGAGCTTGGGCTTCCTAGCTTTTATTCTTTAGGTTTGCATTGTTGATTTAGTACAATTTAGGTTAACTTATCTGTTTTCATTTGATTAATCTTTTAAGACATTTATTGTTCAATCCTGCATTTAGTTTGTTTTGTGTATGAATTGTAATTAGAGGCTGTCCTATCAGACATCTCACACCAAATGTACTTTCCTTGTGAGATACAATACTTGAAGTAAATTAAAATGTGGTGCTCTTATTGTGGAGGGTGCACTGTAGTTTTGGAAGTTTGAATATGCAAACACAGTGAGAAGAAATTGTACACTAAACACAGGGAACAAGAGCTGGTGCTGGATATTTGTAAAGGTTTCATTTACGTTCTTGACTTTAATATGAACAAGAACAATGTGAATTATTTGAACAGGCTAGGAACTGAAAGAACTCAAACTGTATCAGGCTATGAATGTATTAAGCATTCTAATCCAGTTCCACTGGACCTCAGAATAGTGAGGTAGCTCAGTCCAGAGTCCTGTTGTAGCTGTTTGGCGTTAGTAAATCATTTATAAAGTTTTAGGTGAAGGAAATCAGTTGTTCAACAACACGGAACTTATGTACTACCTACTTTGTAAAGAACATCTCATTTTCAAATCCAAGGACAATGAATTTATCCAGGTAAGGTCAACCTACTGAAATCTAGCAAAACTTTTACAGAAAGCTGTGGTAATTAACCAGTCGAGCTTTTCTTATAATGTTTTTATAATTGTGATATTTTTTTTCTGTGCTCGTTTTTCATCAGTGATTACTTTGCTCTTTTGACACTGACTCACACAGAAGGAATTTTGAACTAAGTTTTCATTATGCTTTGGTATTAGGTTTCTAAACATTAAAAGACGAGGTGAAAGCTGGGCACTGGGAAAGCTAATTTAAGTATCTCTTAGCTGGGAGCTTAAACTGCAGGTAGTCTGAGACTTGTGTAAAAGGGTTACGATCTACTAAGTACTCAAAACTTATTATGACCTTGCTAAAATGCTGCCAGGCTTTTAGATTTTGTGCAAGTGCATGAAAAATTATTGAGCCAGATTTCTCTCCTTTGTGTAGTGTTTCTATATGTCTCACTACCTGATAATCCCAATTCTCACACCCAAGCACTAGGCTTTATCCATCCATTAGCTTTTGTTGGCTAATTCCCATTTGTTAGGTTTGAGGCTTTTTTTTCTCATCCACTTATAAAAACACCATGTTGATTTAACAGTTATAATGCCTGAATTATGCTGACAAAACTGCTTTTTTTTATTTTGGTGTGTTGCTAATAGGGTCAAATCCTCTTGCTGGTATTACACCTGGAAACGTGCTGATTTTCCATGTTCAGCTTTTAATCTGCAGTTGGTAAATGTGTGGAAGAAGTTAAATTTGTGGTGCTTCTGTACTTTGTCCAACTTGATCTTTTGACTTCATGAAGATCTAGTTCAGGAGATTGTAAGACACGGATTAAAATCTCAATTCACATTATGCATAAATAATAACAGACACTTCTGTCCCTTCCTTAGAAGGCTGCAATGTAATCTGCTATTTTGGCTGCAGGAATACTTGAGTGATTATAAATAGTAACATCGAACAGTTCTATTTAAATTCATTACAGATGGATGTAGAAAAACTGTACCAATGGAACTCTGTTTGTTCTTTGCAATGATGTTTTTGTTTTTACACATTTGTGCTTCCAACAACAGTGGGGCAAGAGTGTGATAAGAACATGTAGTTTCTTGTTGTTTTTTTCTGTGTCTGTATGTGGTTTCTTTGCAG
Seq C2 exon
GCTCCTAGAAACAGATAGCAAATCCTTACGATCAGTAAATGGGTCAAGAAGAAATAGTGGATCTTCTCTTGTATCTAGTTCATCAGCTTCTAGCAATCTCAGCCACCTTGAAGAAGACTCGTGGATCCTGTGGGGGAGAATTGTGAATGAATGGGAAGATGTACGGAAAAAGAAAGAAAAGCAAGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005935:ENSGALT00000009552:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.760 A=NA C2=0.391
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]