GgaINT0039591 @ galGal4
Intron Retention
Gene
ENSGALG00000002246 | DENND1B
Description
DENN/MADD domain containing 1B [Source:HGNC Symbol;Acc:HGNC:28404]
Coordinates
chr8:2384963-2387703:+
Coord C1 exon
chr8:2384963-2385043
Coord A exon
chr8:2385044-2387643
Coord C2 exon
chr8:2387644-2387703
Length
2600 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TTTCTCTCATATTGCATAAGAAC
3' ss Score
1.59
Exon sequences
Seq C1 exon
GAAAATGACTCAAATGATTTGTTAAAGTCATTGTATAGCCACCCTGTGCCAAAGGCAAATGCTTTAGTCAGTTTAAGTGTG
Seq A exon
GTAAGTATTCTCTGCGTTATTCCTTGTTCTATCGCCTAATTCAAAATGCCTAACTATAGTCGAAACAAACCTTTTGTATACATTAAGCTTATATTGTTTTCCATCATTAGCTGGCTTAGATAATCTTTTTAACCTTTCATTTTTTTCTGTGCAGAATAGTTTCTCTCTATCTGGAGTTGTACTCTTAAAGTCAGTCAAAAAGAAACAAATTGCATTTTTGCTCTATGAATGGAAAAGGAATCTGAAGTGAGATCATGGGATCTAGCATTAGTAGAACTACTTGTTTGTGTTTCTGTCTCTTTCTTGTAGATAGTTTTAGTTTCTCCAACTGTAAATTAGGATACACTGACTTTTATTGCTTCTTATGCCAGAGTAGGTAGCCTTAGAGAACTGGAAACAAGTTTGTGTAAGCTTTTCCATCTTCCTACTCCGTCTTCCCAGTTTTGCTTGATTTGATAATCTCTAGGAAAGATAAGAGTATACTGCATTGCATAAAGCTTATAGCACAAGTAGAGATGAAAATGAGTGTCTGCCACAGTGCTTGGTGCACTGATGCTTTGTTATGTGGCACTACATGCTCTCAGTATGGAACGTTGGTTTTGCCATAGAAACATCAGTGAGCCTGTTGCAGTTATAGTTCCTGATGATCTTAACAGAAGAAGCGTATGAAAGTATGCTTATATATATCTTATATCTGTAGAGGCCATATCAAATATAAAGCTGGCATCAGTTTGCAAGACAGAGAAAGAAATGATACGAAGTCTTCTATTACTTACTGAAGGCTCGATAAATTGTTTATCTTGACCTTGCTTGTGACATTTTCCTGTTACTTTTAACCCATTTATTTTGGAATTGGGCCCTGAACTTCAAGTGAAGTAAGAGCAGATTTGGAAGAAACATGAGACCCTCTTAGAAGGGCACACAAAAATAAAGAAGGAACCACTGCCCGTAGTTATTTACTTTTGCTCCTTAAAATAACACTGCCTTCATTTTGATTTCTTTTCAGATTTCACTTTCATTGTTATACTTCTGTTCAATAGTCTGTACAACCCTAATATTTTTATTCTTTGGACAATAATAATCCACTGTGTCTTGAAGGCCTTCCAGTCTTGCATGGTGTTTTTCACCAGAACATACTGCTGTTTTTTGAGGCTACAGTTTGATTTTTGTTTCTGTTGCTTTGCTGTATGTGTGTGTATATATGTACATAAGTATATTCATTTGTTGTTGTCATTATAACAAATGTTTATTTTTCAGTAAGTAACAGAAATTAAAATTATTTTTTCAGAATGACATATTATATTCTATCAACCTGCAGTAGTACCCTCTTGTATATGAAATAATATTTTGCCATGGCTAACTACTGCAGTGTTATAACCAATTCTAATTTGGAAATTGTAAAACCCTTTGTAACATCCTTTAAAAATTCTCCTGTGTTTCAGTGGGACATAAATTTTTAAGCTTTTTTTCCTTTTGTTTCCTGGAAAGCTTTGCTGTCTATTGCTGTCAGTGCTGTGTTTCATCTTGTAGAGCTTTCCTATCTCAGACTGAATGTTGTGGTGAACTTTGGAGTGGAGGATACAACCAGCAACACTGGGATGACAAATTGCTTGCAATTAAGTTGATGCTTGCTGGTTTTATTTCAATACTAGTTGACGTTTGAATTTATTTTTTCTCAGCTGTCTCTTGTTCCCAGTAGTTTGTTCCATGAAAGAGTTTTGTTATCTTTTTAGCTGAAAAATGATTATCCAAATGCAGGCTGGTTGCCAAATGCTTGGCTGCAGGCGCATTTGAGCAAGTACTGTGGGTTCCGGCAGGAAAAAGCAGGATGGAGTAGGTTCCCTTGAATCAAAATGTGTTTCGGATCTTCAGGCATCTATTTTCATAAGCTCAGTGCTGCAGGGAGTAGGGAAATGTTTGTGGCCACTTTCAACTCTAACTTTGTAAGTCAAGCTTTTTATATCGGTGTCTTTTTCTGGCTTCTTGTGTATTGTAAATAGGCTTGAGTGGAACAGTCAGTGGTCAAAGAAACTACAGTCTGAAAAATAATTGTAGGAATAACAGCATGAGGTTGTCTTTCATTGTGCCAGGATGAGTCTAGTTCAAATTTCATGATGCAGAATTAAAAAGATTCATCCACTTTACTCAGATATGTAGAGTAAAGCTCATAGACATTTAACTGGGGTTTAAATGGCAGACCACATTGGTACTTACAATTACATGTATAAAATCATGCATAAAATATGGCATGTATCCAGATACATGATTTTTCCCAGTAATCTTTGGTAAGTAGGACACCAAAATACCTTGATCCCGTTAAGGACCGTGTTCTTTTCTTGCACCTCTGTCTTGTTATGAGCAATCACTGATTCTATGAAACCTGAGCTTTCTATCTCTTCCATTTAACCCACGGAGGGCCAACAAAAGTGCTTTTGTTGGAAGAGTTAACTAAGTCAAGACTGACTTCAGATGGGGATGAAACATAAAATAGAGCATATTTTTAGAACAGATTTTAGACATAGGAAGCATTGGAGTCATCTTTGCTCTACTGGTTGAAAAGCTAAACAAATCAATTCAATCTTTCTCTCATATTGCATAAG
Seq C2 exon
AACCAAGAGATGATTTTTGCAAGTAAGCAAGTTTTGAAAAAACAGCCTTGCCTTGTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246:ENSGALT00000003516:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(12.9=100)
A:
NA
C2:
PF0214116=DENN=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]