GgaINT0043431 @ galGal4
Intron Retention
Gene
ENSGALG00000007078 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:RefSeq peptide;Acc:NP_001012925]
Coordinates
chr6:21572238-21572851:+
Coord C1 exon
chr6:21572238-21572371
Coord A exon
chr6:21572372-21572733
Coord C2 exon
chr6:21572734-21572851
Length
362 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTA
5' ss Score
7.04
3' ss Seq
AGGATCTATTTTGTCCACAGTAT
3' ss Score
6.06
Exon sequences
Seq C1 exon
TCACAGGTACCAAACCAAAGATGTCCACAACAAGGAAAATTCTACTCATACTAGGATTCCTCTCCACTTTGGCTGCAATTGCTTTAATTACTGTAGCAGTGACCCAAAACCAGCCACTTCCGAAGAATATCAAG
Seq A exon
GTATTACAAGCTGAGGCTCTAATAGGAAAACAAGCCAAGTGGAGTTTTAGGCATGCATGGTGCTCAAGGATGTGTTGCTGTCCCTGCTGGGTCTGGCTGATCTCCTTTCCAGCTCCATGCATCTCAAGCAACCTGATCAAAACAGATACACCTTCACAGGAGACCATCCCCTAAGTAATCACTTATGATCTTTCTACTGCTCTCATTCCCTCTGATGAAAACTTAGAACAAAACACTGCTGGGGAGAGTAATGGTGTGGCATGTCCCCACAGTTGCCAGATTTGCTCTTCATTTCTGCTCATGCATATGCTGCATCCAACTCAGTGGCTCAGGTGTGATGACAGGATCTATTTTGTCCACAG
Seq C2 exon
TATGGGATTGTGCTAGATGCGGGGTCATCCCACACAAACCTGTACGTGTACGAGTGGCCAGCAGAGAAGGAGAATGACACTGGAGTGGTGCAGCAGGTGGAGGTGTGTAAAGTCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007078:ENSGALT00000011467:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.8=17.8)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(33.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCAAACCAAAGATGTCCACA
R:
CTTCGACTTTACACACCTCCACC
Band lengths:
246-608
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]