MmuINT0057662 @ mm9
Intron Retention
Gene
ENSMUSG00000048120 | Entpd1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:MGI Symbol;Acc:MGI:102805]
Coordinates
chr19:40785653-40795064:+
Coord C1 exon
chr19:40785653-40785780
Coord A exon
chr19:40785781-40794946
Coord C2 exon
chr19:40794947-40795064
Length
9166 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
TACATTTGATTTGCCCTCAGTAT
3' ss Score
5.86
Exon sequences
Seq C1 exon
ATTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG
Seq A exon
GCAAGTAAAATCACAAACATTTGCAATACCGTTATTACTTTGTTTTATCTTTTAATTTAAAAATGTGATACAGAAATCTATATATAAATATATAAATAAAATAAATATAAAAATAATATAAATAAAATTTAAAAACATATATTTTACACTTAAACTGAAAAGGCAATAAATATATCTATACGGGGCCCACCTCACATAAGGTAGGCACACTGGTACATATGTCATGTGGGCAGTGACATATGCAGAAGGTGACATGGCTGGGAGGTCCTAGAACACACATTTTGAAGTATATTCTGCTTGCTGAGAAGATGATGGCCTATGAGCCTGGAAAATCAGACGAATGCCCTGTTTCCGAAACTGCCGCCACCCACGCTGCATCACTTGCTGTGTAGAAAAGGCGTGGGTGTTCCGTTGGCCTCTGTTTGTCACACAAATTCATTCCAGTTGTGCTGTGTACAGCGGCCACTTTGTCAGGACAGAAACTGGCTGGCGCCAGCTCAGTGATGGTGGTCTCTTGCTTCTTAGTGTTTAGTGGCATTGGCTCTCTGGCAAGACTTCACTCGCACTGAAGCCTCATGACATCTTGGTTTTGCTATTTGTTTACCAGCCCCAGAAGCAAGTGATCGCCTTCTCGAGTGACCTTTTTGCATGTCTAGGATTGCATCACTGGGGAGAAGGGCCACTGAGGAGGCACACTTGAGCTCTGTGTCCCCAGTGTCTGCTGTGGTCAGGGCTGGCTCCTTCACGTCCAGTGGTCTGCAAGTTTACTGGGCTTCTGTTTTGTTATGTTGTTTGGTAAAAGAGAGCCAGGTCTTTGACACTCATTAAATAGAAGTATCTCAAGAGCAGCTACTACCATTGAAGTGGATGCGGTAGTATTGCTGATTTATTTTGCACAAAGATAGTTTTACAACAAAAAGCTGACCATTTGTTAAAGTTACCGATTTCAGTAAGATATCTATCACATATTGGGAATGAAACATTGCACAGTACAGAGAGATGACCACCACTGTAGGGGGTCTACTGGACACTGCTGCTTTCGAGTGTACTCTCAGAAGACATCTCTGAAATGGTTCAAACTTTAGCTGAATGAATATGGTGTACAAGACAATGTATTATAAAATCTAAAATAAGAAACAAGAGCAGGACCATTTCTATTGTGTGTGACTCACCACAGCCTTCTAGACTATGTTTATGTATATGTTGCTAAGTTTATTGGTAGGAAGCACAGTTGGCCTCTAGAATCTTTGGGGGATTGGTTCTAGGACACCCACCTTGAATATCCAAATCTGTGGCTGGCTAGTCAAGCCTTTTATGGTACCCAAAGGGTACCATTTCCATATAACCTATTTCAGGCTCTGAGATATAATTCCTGTATGTTTTAAACCATCTCTAGATTCCCCATGAAGCCCAGTGTAATATAAAGTCTATGCAAATAGTTGCCATGCTGTACTTACTGTTTAGGGAGCAGTGGCAAGAAGAAATTGTACAGGTTTCACATGAATAGATTTTAGGAAATGTATTCACTCTCCATTTGCATATTTTGCTCTGCCATCTGCCATATTTGGTTCTGCCATTCTCCATGAATGGAGAACCCACAGGCCTGCAGAGGATTGTATTCTCTTCTCAAATGACCTTAGAAAAGACAGCCCCCATTCAACTATTTGTACACGGACTCTTTGTTTTATGAAGATGAGCTAGCATTGTTTTATTTCTGCTTGCCATGGTTTGGGTTCAGTCTTGCTGAGGAGGTGGTGGCTCCATGCCTGGAGCACATCTGGCATACCACAGGGAGAGCACTTTATCGTGCTCGCACACTTACTTGGATATTCAGTTCTAAACAGATGGAAGACAGGGACTGGGATTCGCTTGTCTTTGCATATATTTTATGTACTCATTCATTTAATAGGTAGCCATTGAACATTTACTCTGAGGGTCTGGAGATGTACCAGTGAGCAGCACTGGGAAAGTGTATGCATTTCCGCGGGGGGGGGGGGGCGGGGGGAGGGGGGCGGGAGATGATCACAGTGCAAGTGTTAGCTTGCAGCCAGCCTGGCCCAACCTGAGAGCGGATGCTATATAGGCATGCGCTGACTCAGCAAAGCAAACAGGATCTCAACAGAAAGGACTGCGCCCTTCTTGGACACAGGCTTGTCAGTGTAGGAGGCAGACGACCAGCCCAGGACCCTCTAGACATCCTGTTTACCCTCAGTGTGAATGTTCAGAATGAAGGCTCAAGAATCTATCTTCAACAGCTATCCTAAGGCATTCTCTTGCCGCGGAGGTCGGAGAATGACTATCAGTACTAGGTGGTCACTTTTAGATGAGCGGTCCATGCTTCTGAAGACAAAGGCTTTGGTGGAGTGGACAGGCAGTAGTGATGGACAGGCAATAGTGATGGACAGGCAGTAGTGATGGACAGGCAGTAGTGATGGACAAGCAGTAGTGATGGACATGCAGTAGTGATGGACAGGCAGTAGTGATGTCTAATGTTGTCCTTGGAAAAGTGCTTTTGTCTCCATGGGTCTCGGTGGTGCTTTGAGTTTTTACTCTGTCCACCACTCCTTAACTCCCTGCTCATAAGTGGATGCTGGTTGTTGATATGACTTTTAGCATGGACATTCCACATTTTGACATGCAAGCTGACCCTATACCAGACAGCAGGCTTGCTTTCAGAATGCCCCTACTGTGGAAATAGGCAGGGTGCTTTCATTTCAATTACAGAAACAGTGAGCGTAAGCAAGTCAATTCCTTCCTCCAAACCTGAGTTCCCTACAGGTCAAGTGGAGATAGTAATAACACCTACTTGATGGTGGGTTGGGATTAAATGGAGAAGAACAAGCAGTGGCTTGTCAGAGAATGTCACACAGCAGAAGCTGAGTGCAGTGGGCCACTGTCAACATCTCTTTACAGCGGATACACTCCATGGAAGCCCCTTCGCCCGTAGCATGTTTCCTCTCCAATACGAACATGTTTGGAACTGAGTCCCATGTGGGTACGCCGGGAGGTGGGGCCTCATGGGAGTGTTCAGGACATGGGGATGCTACTTTCCCCATGGTTTCTGAGCCAACACTACAGGATTCCTCTCGGCTGCTGAAGGGTGGTGGCCTTTCCCAAATCTGCTTTTCCAAAGCAGACTAAAATGATCCTCTGGAATTAGCATTTTTGATTCTCTTTTTATGGAGAAATTGAAAGAATTTGCTTTGGCTTGCACACATAAACGAGCTTGAAAAGCATCTGTTGTTATTTTTACTTTACTGTAGTTTAACATTTTCCATTTTGAAAAGTGGCCCGTGGAGATGGATAGTGATCCCGGTTCTACAGCAGTGTGGATGTAATTAATAACTACTAGATGGTCCACTTTAAAATGGTTCACACAATACATCTTGCGTCATGCATATTTTACCATAGGATTAAGAACAACAAAATAAGAGTTTATATTCAGGACCTAGTGATTCTAACTAAAGGAAAAATAAAGAAGAATAAATAGTTTCTGGATGTTTATCGTCTCCACTGGCATCTTTGTGGCTGGCGGCGCCTGTTTATAGGGTATTAGAAACACATTGTAAAAGATAAGCTTTGTTTATAAGCCCAGGCTCCCTGAGCCAGACCCACAGGGCTGCTTAAGTTACTGTTAAAACTACGAGCACTTTAAAGGGGTGGGGGTTTAAAGATGCAGTTTTTCTAAAGGGGCCCTGTGAGGTTTCCCCGGTAGTTAGAGTCATTGTCCCTTTTGGACTGCTATAACAGACTGCCACTAAAGCATAATTTGTAAAGATGGGATATTTACTTTCTCCAGTACTTTCTCTTCTGGAGACTGGGAAGCTCAAGGTCCATGAATTTCTTATAAGTGTACTTCAAGTCTAGCAAGGACCTAATTTCTGTTTCCAAACTGACATCCTGGATGCTGCACTGTGGCCGGGGGACACCATTCCTCGTATGGGCAGTACATTAGAGGGTTAGAAAAAGGGCAGGCACCTCCCCAAAGCCCACTTCATTGGGTCATTAATTTACTCATGAAAGTAGCATCCCCATGTCCTGAACACTCCCATGAGGCCCCACCTCCCGGCGTACCCACATGGGACTCAGTTCCAAACATGTTCGTATTGGAGAGGAAAGCATTAAGCCAAAGCGTCTGGTTGTGTTGTTTAGGGTGGGGTGTATAACCCAGCCCCAGGCTCACTGCTTTAGATTATGGGACTGTAGGTGGCATAGAGCATGGTGGTTTGTACAGAAAGATCACTCACTCCTCTGTGGAAAATGCACACTCAAAAAGATTGGAAGGAAGTGAAGATTTGGTGATAAAAGTGTTAGTAAGAACATCTAGATGGAATTTTTATTTATTTTTTTTAATTGGGTATTTATTTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCCACACGCTCCCCCACCCACTCCCCCACGCACCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGCACTGAGGCATATAAAGTTTGCCTGACCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTCTGATACATATGCAGCTAGAGACAGGAGCTCCGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGCTCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCCAGGCCCCGGCATAGTCTCACAAGAGACAGCCATATCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGAAGCTGATTATGGGATGGATTCCCGGATATGGCAGTCTCTAGATAGCCCATCCTTTCGTCTCAGCTCCAAACTTAGAATACCCAAGATATAAGATACAATTTGCTAAATGCATGAAACTCAAGAAGAATGAAGACCAAAGTGTGGACACTTTGCCCCTTCCTAGATGGAATTTTAAATGTCTTTCCCCTTCATTTTCTTTCTTTCTTTTTCTTTTTCTTTTCTTCTTTCTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGCCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTACCATCATTGTTCAGCTTCCCTTTCATTTTCTAGGTGATATTGAATAGATTCTAGTACTCTTAAAATAGAAAATACTATTGAAATAATAAATAATAATAATAATACACATATTCCTTCCTTGCCATCGGAATCTTATTTTTTCTTTAATATGAAAGGCATTACTTAGCCGTATATTTAGATTTTTAGAAATGCTTTACCTATGTGCTACAGGAAAACATTGTTTCTTCCCATGGTCAGATTTCCCTAAAGCCATCAGCTAATGGGATGGTGAGTGCAGGAAGGAGGAGGAAGGGACATTCCTCAAACTTCTGGCAATGTACATTTGCTGAGGTCCTGTGGCCCCTTGTGTCCTGGAACATGCTCTGCGGAATGCTGTGGTGGTGGGCAGAGCACAAGCTGGGGGCTGTCGCAATCCTTGGGGACACTGAAACCACAAGAGGCAACCCCCTCAAGTGTGTAGACTAAGCACATGGACTGTCCAGCTTTAGCTGTTCTCAAAATGTCAACTGTTTGTTCTATGAGACAAGTTAGGAGGCAGCACAAAGCAGCCCTCAGCAGGCATGGTTCACAGGTTAGCCCTCCAGCACGGTGCACGGGCTGGAATGTCCCGTACCACCATCTCAAATACTTCCAAACAAATGTGATAATGTTTTCATCTCTCCACTGCCTCGCTGTGTAGGGCCCTAGAGAAGCAGGCCAACAGAAGCAAGGGCAGCCTGTTGGCTCTCCTGGAGAGGAGTCCTCCATGTTAACAAAAATAGAAAGAACGGGCCGTCCTGATTCCAGATAAAGGCTGCTTGCTGCAGTCTCTCTAGCTTCTATCATGAGCCATTGTGGCTGCAACATTTTCTGGTAGAAAGAACTCAGGGGCTCTGCTAGGGGACAGTGGAAAATTTCACTGTGTAACACAAGAGCCTTTACTCACACCCTGGGAGGTTTCCCTGGGGTCTCAAGGCCCTGGACCCCAACCAGCAATCCCTCCCCAACCACTGTGATCACCTAAGGCAGTTCCTGGATTCCCATGATTCAGAGAGGCTGCCCTCTTTGCTTCTTGATTGTACTCAGCATATATATGTATATGTGTATGTATATATATATATGTATATATACATACACACACATATATGCATATATATCATGATATATAATATATATGTGTGTACTCAGCATATATATATATCCATATATATGCATATATATCATGATATATAATATATATGTGTGTACTCTGCATGTATATATATATATATCCTTTTCTTTTTGAGCACATGAAACTAATTACTAAAGAGATCCCCCTCCAATACCTGCACTGTGCATAAGGACACAGAGAACACTGAGGAGTTATTGGAACATCAAGGATCCTCAGGAGGTCTGTACAGGGCTGCCTCCTAGTGAAACGGAATGACTTTAGGTACCTAAGAGGCTCTGCCTTTGGCTATACCTAGTGGCCAGGGAGGTCTCTTAAATTCTCACTCTTGTCTTTTCTACCTGTAAGCTCTTAGGTATTAATAGATGAGACAATGTGAACTTATATAATATAAATACATATTACAAATATAGTCTTTTTTTTTCAAGTGGAAGGCCCCATTTTGAACTGCACAGGCCCAAGGGCACCGCTGCTCTACTTTGCTTTGTCTCGCTTTCTCACTAGAGATGATTAGAGAACGAATGTTCAAGGGCTGGAGAGGTGGCTCTGATACAGCACTTGCTAGGTGAGTGTGAGGACCAGAGTTCTGATTCCCAGAGCACATACCTGCTGGAGGCCACAGCAGCATGTCTGTAAGCCCACCATTCAGAAGGTGGAGATAGGAGACCCCAGTAGCAAACTGACTAGACAGACCCAGACTAACTGTGTTGGCAACCCTGCCTCAGTGAACAAGGTACTTGAGGGAGACTCCTGGTGTCAGCCCCAGGCCTCCACGTGCACTTACTTACATGTGACCACATGCATGTGAACATCCGTACTCACAGGACACCGCTTACACTTATGTAAAATCAAACCACATGTGCTGTCATATTATCCTGATAGAGCCCATGGAAGGCATCACTAATCAAACCACATGTGCTGTCATGTTATCCTGATAGAGCCCGTGGAAGGCATCACTAATCAATATCAGATTTATCCCCAATTTTGTGAATATTAATTGACCAATATAGGCATTTGACAGTCTACTCCATGGGAGAAATAGCTTTAAAAGAAAAAAAGAAAAAGAAAAAAAATAAAGTTTTTATTCCATAAAAGCGAAATCTCATGAATGTTTAAAGCAGCTATATCTGTAATAGTCTCGATTATAAATAGTCCAAATGTCTGTCAACATTAGAATGAATGAAAACACAGTGACATTACACCTAGTGGCTATGCTATACGATGTCCCTTTGCTACAGCTCAAAACAGACAAACGTCATCTTTGGTGACAAATGTCAAAGCAGAGATTGCTTCTTGGGGAAAATGACTAAAGGAGCACCAAGAAGCCTCCTGGGCCCACAAGTGTTCTGTATTTGATTTGTCTAGTGTCGGGTGGGTGTGCACTGTGCAGAAGTACACTGGGGCTTGTCCTCACGTCTGTACACTGTGCCAGAGTCGTCCTTGCATCCTCATGTCTGTACACAGTGCCAGAGTCGTCCTTACAGATGTCTTTAGAAGGGATCTCCACGATGCCTGGCTTTGTGCTCAGCCCTTGTTCCATGTTCCACAGACAAGGTCTTGATTCTGAGGCTAAATCAGACTAGATTTATTAACTACCTTCTGGTATTTCTCATCTATATAAAAAGGATTAAAAATAGCCTCTGCTTCTTGGCATTGTTCTGAGTTCAAATAAAGTAATTCACGTCTAAAACACTTCACACGATCCATCCCCGCTTGGTGCATCATCAACTCACTCACGATACCCAATGTGGTGCCTTTGGTCCCGCCCTTTTTCCCTCTAACCACCTAGTTCATATTTATGCTGCTTTTTCTTCTCATCTTCTGTGCTTCAGGTACACATGTATATATGGACATGCCTGCACATTTGTGCACATGCATGTGGAGATCAGAAGGCAACCTCAGGTGACATTCCTCCACAGGCACCATCCACCTTATTCTTTGAAATGGAGCCCTCCCTGGGGCCTGGGCCCTGCTGATCAGGACAGGCTAGCTGACCAGTGAGCCTCAGCCGCACCCGAGGCCTCGCACTGTCGGGATTGCAGGCACAGCACCACGCCCAGCTTCTCACATGTGTGCCGGGGCTCAGAGGCCTTTGCTGCTTAAGCTGCCCCCCTGTGTTCCCGGATCCCCGATTTCCTCAACTCCTGCAGCCCCCTCCTCCCTTTAAAGAGCTGCAGACACCAAGTGCATCTGTCTTAAAATATGCCAAATACAGCTTTACAGTTTCCTGAATTAAAAAAAGCAAGCCTTTCTCTCTTTAAAATAGAATTCCACAGTCACTGAACCCAAATCAGTTGCATACATTTATCACATCTCTGCAGCCTCTGTGGGCTAGCCCAGTGGTTGCCAGGCTTGTCTGCGCATTAGGATCCTACAGGATCTCATGATGCTGCTGGTGAGCAGACCACTCTAAACCAGCGTCTGAGGTGGGACGGGGTGGGGGTGGGGTGGGGGTGGAGTGGGGGTGGGGCTCAGCCTCTGTAGCTCTCAGCTGATACCAGGGTGTGGACAAGTGTGAGAAGCCATGGTTTTCTGTTTCTTTCATAGTCTCCACTGCTTCAGCCTGTGGGATTGATCCCAGCTTCACACTAGAATAACTGAGCATTTCCTAAATAGCCCCACGGCTCAGGCCCGCCCCGGGTAAGGCCCGGATGTTTCTAAGGTGCAGCCTTATCTAGAGTGATGCACTGATAACCCTTGGCACTGGGGGTGGTCGCTCTAGTTCTCAGCACCAAATGTTCCACTTAGCTTAGAGAGAGAATTTTCTCTTTATGGTTTGAAAATTCCCACCTCTGTCTACTTCCTTTGCAAGCTAAATATGGAGAAGTGTGGTGTCGTGCTAATAAGTGTTTTACATTTGATTTGCCCTCAG
Seq C2 exon
TATGGGATTGTGTTGGATGCGGGGTCATCTCACACCAACCTGTACATCTACAAGTGGCCGGCCGAGAAGGAGAATGACACAGGGGTGGTGCAGCAGTTAGAGGAATGCCAAGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048120-Entpd1:NM_009848:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.9=18.6)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(16.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: