GgaINT0044597 @ galGal3
Intron Retention
Gene
ENSGALG00000009693 | CPXM2
Description
NA
Coordinates
chr6:33378890-33385478:-
Coord C1 exon
chr6:33385282-33385478
Coord A exon
chr6:33379070-33385281
Coord C2 exon
chr6:33378890-33379069
Length
6212 bp
Sequences
Splice sites
5' ss Seq
GCGGTAATG
5' ss Score
5.76
3' ss Seq
TTTTCCCCCTTCAATCTAAGGGC
3' ss Score
8.04
Exon sequences
Seq C1 exon
GTGAACCAGAATTTCGGTACATTGCAGGAGCTCATGGGAATGAAGTGCTGGGACGTGAGCTGATCCTTTTGTTAATGCAGTTCATGTGTCAGGAATACCTCGCTGGGAACCCACGCATTGTGCATCTCATCGAGGATACCAGGATCCACCTTCTTCCCTCAGTCAACCCAGATGGATACGACAAGGCATACAAAGCG
Seq A exon
GTAATGTGGAGGAATTATTTAGATCTGTTAGATTAATGAAGCAAGCTACTGTTGTCACTTGTTTTTAATTTTCCGGAGATGATATGTTGCGAGCAACTAAAAGAATCAAAATAAAAGATAAAAACAGAAACATCAAAGTAAACATAAGCCACTGAAGCATCTTACCTGGGGAAAAATTTGTATTGGTCTTTATGTGATGTTGGCTAATATGAGGATGCATATGGAAAGGAGGGGCCCCAAGACTTCCACAACAAACCATACTAAGGAGTAAATCAGTGAGAGCACCATCACAGAGAATGAATAATTTGTGCAGCCTGTTTTGTCGTGGGAAAACAAAGCTTAAGCACATAAAAATCTGTATTCCTCTGTAGCTGAAATTTAATATAACACCTTTAAGGAGCACACTGTGTTGGGCATCATGATATTTCAGTCTGGAATAAGACAAACAACAGGGAGGGAAAATTCATGGCTCTGTTCAGGTGCACTGGCAAATCTTCCTGGGCAGTCTGTAGCAGCAGACTAGAATACAAAAGCTGTGCTCACAGCCGTGGAAGGGATGTATGCCATCTCCACTGCAACCTAGGGAAAAATAGTCTTCAGCAGAAACCTTGAAAACAAACCGGAACATTTTGTCTAACCCCAGGTGTTTTGTCTTTGGCTTTACCTCGACCAACTGGAAACATAAAAATCCATGTTTTCATTTCAGTGATAGCAGTAATTCATCCTTCCATTTCTCTGCATGGATCATCCCGAATCACTTTGCTGGGGATCACAGGTTGTCATAATCTGAATGATCATTTCTTTTTCTTTTCTTCTTTTTTTCCCCTTCAATCTAAGGGCTCAGAATTAGGGGGCTGGTCTTTAGGTCGATGGACTCAGGATGGCATTGACATCAACAATAATTTCCCTGATTTAAACTCTTTGCTCTGGGAGTCTGAAGATCAGAAGAAGAGCAAAAGGAAAGTTCCAAACCATCACATCCCCATTCCTGACTGGTACCTGTCTGAAAATGCCACCGTAAGTAACACTGGCTTTGGAGAGATGGGAAAATGAAGTTGGGGGCAGGTTGAAAGACTGAGCTTTGTATTTCTCGTGGAAAATGCAGCTTGCTGGTGATGCTGCATGCCTGCTCTAAGACAACTATCTGGGCTTCCCTGATAGTCGATAGAAATAAAATTGCACCACAAAGATGCAGTTGGGTCCCATGTTTTAGCAGCTGCCCTTGGAAAGGGAGCAGCTTCCTGCAGTGCCATCTTTTCTCTCGGCTATTGGGAGAGCCTGGAGGACTTGATACCCAGGTTTGAGTCCTAGACAGGTAAAGAAATGGAAACATAAACCCAGAGCTGGGCTCATCTCTGAGTCAGGCTGCTCCCCAGCTTTGCAGCATGGGTGAGCTCTTTTACAAGGTATGCACCATGTGGATTTCTCCTGGTTTTTTTTTGTTTTGTTTTTATGTTGCTTGAAATAACATTGCAGTGGCTTACGCTAGCCCTGTTAAAATTTAACTTCTTTTTTGCATGGCATTTGAAATAACTATAGTGGCCAAGCTTCCCCTGTTTTGCAGGGAAGGCACTTAACTGTGGCTGTTCTGTGGGCTTTAGAAATATTGCCCTGCTTAAAATCCTTTATTTCCCAAACTCATTCCAGCTGATGCCATTGGGCACAGCGTTATGATCCGACAACTTGTTGGTTCTAAATCACTCCTGCAGGATAAAACAAATATGCTAAGGTTTGCGTTAGCTTTTATGGGTTGTCAGTGGCCTCCAAAACGTGTCTGGCAGGCACTGTCATTAAAATATTTTCTTCTTGGCCACGTCTCTTGTGCTGACTACTCACTCTGTGCGAAGCATCTTCCAGTCTGCCTCCAGAAGATCACCAGATCTCACGGGCCACAACAAAGCTGTTTCCTTCTCTCCTAGGTGGCAGTGGAGACGCGAGCAATCATTGCATGGATGGAAAAAATTCCTTTTGTGCTGGGGGGCAATCTGCAGGGAGGAGAGCTGGTCGTGGCGTACCCCTATGACATGGTGCGGTCCCTGTGGAAAACGCAGGACTACACGCCCACACCAGATGACCATGTCTTTCGCTGGCTTGCCTACTCCTACGCCTCCACACACCGGCTGATGACAGACGCGAGGAGGAGAGCGTGTCACACAGAGGACTTCCAGAAGGAGGATGGCACAGTTAATGGCGCCTCTTGGCACACCGTGGCTGGAAGTAGGTGCCTGAGGAAATTAGCGGAATCACAGAATGGCTTGGGTTGGAAGGGACCTTGAAGGTCACCTAGTTGCAAACTCCTGCCATGGGCTGGGTGTCCCCTACTAGCACAGGCTGCCCAGGGCCCATTTGTGAATGTGAGCACCTCCAGAGATGGGCACCCACTCTCCTCTGGGCAGCAGTGCCAGGGCCTCGCCACCCTCTGAGAACAGAATTTCCTCCTAATTTCCCATTCATTGTGCCATTACGCTGTTAAACATGATAATGACATCACTGCCTGGTATGCACTGTGGAAGTAAAGGTGCTAAAATGTGCTCTGAGACCAATATTTCCTCATCTGGAAATCCATTCATTGCATGTCATCAGGTAGCAGCAGATTGACAGGGGCTGCTTTGTCACTAATACCCAATGGCCATTCTGTTTACTACCAGCGTTTCCAGAAGTGCAGTGTGTTAATTTCTAGATTCTGTACAGTCAAGGTTGTTTGCTGGGAGAACAATAACCCAGTCCAAATCCTATATCAGAGGAATCTCAGCCTCTTGCTAGCTGTGTCAAGCTGCAGACCTGCTTGCCTGCTGCCATCCTCCTTTTAAGAGACCTGGATGTGCTCACGCTTAAAATATGAATAGGCTCCGCAGGCATTTTTGCTGCCAGAATAAATTACAGAGCACATCACTCACGGTGTGCTCCAGCCCCTGTCACTGTCACTGAGCGCAAAGGGGAAGCCGTGTCCTGTAGTGCAGACTGAGCATCACTTTCTAGGGAAGCCCAATTAAAGACACATTATTATTAGCAATAGCTGCAGTTATCTCTACAGGTGCACAGTTGAGCAGACTGATGAGGCACCCTGCAGAATCATCACAGCTCTACTCAAAACCTTTATTTCCAGGTGCATCAGTTAGACAACACTTTCTACAGAATTAAGAAGGAAGCAGCATGCCTGAATGACAACAGGAGCCACTGCAGCCCTAATGGCAAACAGATGCGGGAAAGCATCTGTGCAGACCACGTTTTTATTGGAGCTGGCTCTTGTTTGTAACTTGCAGGTAGTTTCACTGCATAAACGTTTCTCAGCTTTGGACTATTTTTTGTACATTGGCCCACGTATGATTAACGTTGGCCAGCCTTTGAAGGCCAGAGCCAAGAATTAACTTTTCAAATGTTTTTTCAGGAGGTTGAAAAGTGGTGGGTGAGTTTCAGGGGGGGGGAAGAGAAAGATTGAACAGCTCGGGTCGCAAGGCCAGTGTCTAATGATAGATTTGTATGCATTTCTCCAAATTCTTTTAAAACAGTGTAAGTTTTTGTTGTTGCTTTTTTTTTTTTTAAAAAAAAAAAAACCTTGGTTGCTAACTTGACTGCTTAATTATATAATTTATGAGCTTAATTTTCCTGAGTGCTACAGAAACACGATTATGAATCAATAGAGGAAAGATGGCACTGGCCATGTCACTGACAGATATTGGTATTAGGTTACATTAAGTAATGGTGTGCAATATGGATGCTGAATAATATCTTGATTTCTTAGAAATGATTGCATATTGGATTTTGTTCATCTGATCTATTTTATTACTTTACGATGTTTCTCATTATGTTACATATCCTGCTTTATTCCATGATAATAAGACTTCCAATATTGTCTTTGACTGAAATGCTTGAAATATTGCTTCTGCCTTTGTTCTTTACATCCCAGAGCCTAGGCTGAACCTCACATGATGTGGTCTCCATTCAACTGTGGGATGGTTTTAGACCTTTTCTCTAGACAGGGAAATGGAATGAATTTTGTGGTGTAGATATGTGTACACACGTAGAGAAAGACATGCACATATCTATATGCGCATAGACATGTTCTACAGCTGACTGTGACCAACAGCACCCTGTGTTTTCCAAATATGATTCCAGGATTGAACGCAAATTTCTCTCATACTTTTTCCATTCCATTCCCTCTGTATTCCCATGCTGACACAAATGTAGATACATTGGTCACTCAACTTTGTTTCTTTACCCTTTAGTTCAATGTGTAGCAGTTTCTGCATGCATTTTGGACTGCAATGAGTGCAAGTTCTTCAGATAAATTTACATATAACATTTCTGCACTGGGTGTACTGCTCAAAGGCAAAGAACAGATGAATTTTATTTTATTTCTAGTGTTTTCAAGGCTGGAATTGCCTGTTAAGACACTACGCAGAGAGTTGCTCTTGGCAACGTTAAGCCATTTTCTAAAATACATGTACTAAAACTGAGCAATTGCTATGTATTGCAAAACATTTCACAATAGATTAATCAGGATGTGATAGAATATGTGAGGGAAAAATAACTGAGGCTGTTTCTCAGATGGAAGGGAAGCACGTTTGTGCAGCGCAGCATATGCCACTGTCTGATATTCAGGCTTCCCCCACCAACAAATGTGAAGAGCATAACATCTGCATTACATAACCCTCCAACTCTGCACCCAGGAGGCTCTGAGGTCTTATTAAATATTTGACTACTGCTCTGTTGTAATTGGACAGGACTACAGTTTTTTTTTGTTTTTTTTTTTAGTTTTTAACTCTTTTCCATTAGAAGTAAATGCATTTCCTTATAATCTTTGCCACTGTGAAGTATAACACTTAGTGATCATGAATGAACATTTGTTTAAATATTTTTTATTGTAAAAGCGAGTGGATAGTAAGGAATGAAGCTCCTGTCGCTCCTTTCTCTAATGCTCATAGACTGTACCATGTTATCTGTGTTGTTGTAAGGAGCTAATAAATGGAATTTTCCAAAGGAAAATAGCTGCAAGAGTTGGAAGAGAAAGCTGAAAAATGGAAATAGTTGAGATCTGAATCTAAATACAGTCTTCCATAGCAGTCAAGACCTTTGTAAAGGTCACAGCAATTTCTGTGATGCAAACAAGCTGCAGCTCCTCACAGGCAATGGTGTTCCTGGGTTTTGGTCAGGACAGATTTCTAATGGAAGTCCACATCACAGGGTGATGATGCAGATTCTATTCCTTTGCAAAGCCATAAGAGGAAACACAGAATGGATTCTTTCACTCATTACAAGCTTATATATATATACACTAGATATATGTTTTAAACTGCATTGTTTCCATTTTATTTCATTCTCTTGTATTTTACCCCACTTTATTTTTTCACTCTCCATTGACAGGCTTACCACACTTTATTTTTTTACTCCCCATTGACAGGCATAAATGACTTCAGCTATCTGCACACCAACTGCTTTGAGCTGTCCATCTATGTGGGCTGCGATAAGTATCCCCACGAGAGCGAGTTGCCTGAGGAGTGGGAGAACAACCGGGAGTCCCTCATCGTTTTCATGGAGCAGGTATTCAAGAGCATCCTAACTCCTGACCCACTTGTTGGCTTCCTTTTCTGCTGTTTTATCTGCGTGTTATATCTGTCTCTCGTATTCAGTGTTGCTGGGATCCTGCCAGTATTTGTAAGCTGAGTTCACATTGTATGAACCCCAAAATAGGTATGCTTAATTCACATGTGGAATTCTTGATTTGCTCCATCTTTCTAATGACAGCACTGCTCCTTGCTAAGTAATGTTTATTTTTCGCTTGTCCTCCCAACAGGTCCATCGGGGCATCAAGGGCATAGTGAAAGACACACATGGAAGGGGAATCCCAAATGCCATTATTTCAGTAGAAGGCGTTAACCATGACTGCGCACAGGTAATACATAATAATAGTATGAGCAAATAANNNNNNNNNNGTATGCCATCTCCACTGCAACCTAGGGAAAAATAGTCTTCAGCAGAAACCTTGAAAACAAACCGGAACATTTTGTCTAACCCCAGGTGTTTTGTCTTTGGCTTTACCTCGACCAACTGGAAACATAAAAATCCATGTTTTCATTTCAGTGATAGCAGTAATTCATCCTTCCATTTCTCTGCATGGATCATCCCGAATCACTTTGCTGGGGATCACAGGTTGTCATAATCTGAATGATCATTTCTTTTTCTTTTCTTCTTTTTTCCCCCTTCAATCTAAG
Seq C2 exon
GGCTCAGAATTAGGGGGCTGGTCTTTAGGTCGATGGACTCAGGATGGCATTGACATCAACAATAATTTCCCTGATTTAAACTCTTTGCTCTGGGAGTCTGAAGATCAGAAGAAGAGCAAAAGGAAAGTTCCAAACCATCACATCCCCATTCCTGACTGGTACCTGTCTGAAAATGCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009693:ENSGALT00000015779:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(21.0=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]