BtaINT0043616 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018941 | CPXM2
Description
Bos taurus carboxypeptidase X (M14 family), member 2 (CPXM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206057]
Coordinates
chr26:43849849-43851311:-
Coord C1 exon
chr26:43851115-43851311
Coord A exon
chr26:43850029-43851114
Coord C2 exon
chr26:43849849-43850028
Length
1086 bp
Sequences
Splice sites
5' ss Seq
GGGGTAATG
5' ss Score
4.85
3' ss Seq
CATTCTGAATTGTCTCCCAGGGT
3' ss Score
7.52
Exon sequences
Seq C1 exon
GTGAGCCCGAGTTCCACTACATCGCCGGGGCCCATGGCAACGAGGTGCTGGGCCGGGAGCTGATGCTTTTGCTGATGCAGTTTCTGTGCCAGGAGTACTTGGCGGGGAACTTGCGCATCGTCCGCCTGGTGGAGGAGACCCGGATCCACATACTCCCCTCCCTGAACCCCGACGGCTACGAGAAGGCCTACGAGGGG
Seq A exon
GTAATGGATGGCTTCCCTCCCCCAGCACCGCAGCCGCCCCCGCTCCCTGTCCACACACGCACGATGCACTGAGCCAGGAGTTGACCTGAATTCCGCATCACCAGCTTTCTTTTTCAGTGTCTTTCTGCTGAGTCAGGGGGAACCCGGAAGGTTTATGAAAGAGGCATTGCACTAATTGAGAATTATGGGGACCCTGAGAAGTGGACACACTAACAGATTGAAGAAAAGGATGCGAAAAACAATATTGTTATATATACAATGGGGCCAATAAGGCAGAATAATAATTACACCTAACATTAATTGAACACTTAAAGCATATTCTAACCTTGATGATTACCTATAAATCCTCTCATCAGTTTTCTGAGGACAGCTGTTTTTATTATCCTGATACATGGTTTATGTTTTATGTTCTGGTTATAATATAGAATTTATAGGTTATAGTTATATATGGAATATATATATATAGAATTATGTAGAGATTACAGTTAGTATAATGTTGTATTGTATATTCATAATTATATATCACACCATCTGGGAATAAAATGGCAAACTATACTTCAAACAATGGTGCTCATCAAATGCAGATTTACAGATTTTTGCTTTTGTTTATTGGTGCAAATAGTTGGTTAGAGATTTGTGTTGCTAAATCGTGAGCCAGAATTGCAGCTGAACATATTAATATGGCAACTCTTGATTTTTGCAGTGAGAGTCTTAGACTTATTACTGCTTGGAGTTTCATTCAACCAGTGTAGAAGAGGTGAAGGCAGACGAGTCAGGAGAGAACTAACCCTTTTCTGAGGACTGCTCTGTGGCAGGATGACTCTGTACATTCCCTCTTGGGAGTGGGAATGATAATGACTACATAGAGTGGGAATAATAACAATAATGACTACATTATCCATCACCCACCAAACAGTAACAGATTATTAGCCAAATAGTCTCCCTTGGATGTCATCTTTGTGTCAGAGGGTGTTTGGAGGCTTCGAGGCACACCCCAGATGGAGGCCGACATGGAGCGGTCTTGTGTGTGAGAGACAGGGGGGTCCAGAGGTCTGTGGGTCCCTCACATTCTGAATTGTCTCCCAG
Seq C2 exon
GGTTCCGAGCTGGGAGGCTGGTCCCTGGGCCGTTGGACCCATGACGGGATTGACATCAACAACAACTTTCCTGACTTAAACACGCTGCTCTGGGAGGCGGAGGACCGACAGAACATCCCAAGGAAAGTGCCCAATCACTATATCGCCATCCCCGAGTGGTTTCTGTCTGAAAATGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018941:ENSBTAT00000025207:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(21.0=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCCGAGTTCCACTACAT
R:
CCACTCGGGGATGGCGATATA
Band lengths:
355-1441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]