GgaINT1010406 @ galGal4
Intron Retention
Gene
ENSGALG00000009693 | CPXM2
Description
carboxypeptidase X (M14 family), member 2 [Source:HGNC Symbol;Acc:HGNC:26977]
Coordinates
chr6:31290714-31291927:-
Coord C1 exon
chr6:31291731-31291927
Coord A exon
chr6:31290894-31291730
Coord C2 exon
chr6:31290714-31290893
Length
837 bp
Sequences
Splice sites
5' ss Seq
GCGGTAATG
5' ss Score
5.76
3' ss Seq
TTTTTCCCCTTCAATCTAAGGGC
3' ss Score
7.88
Exon sequences
Seq C1 exon
GTGAACCAGAATTTCGGTACATTGCAGGAGCTCATGGGAATGAAGTGCTGGGACGTGAGCTGATCCTTTTGTTAATGCAGTTCATGTGTCAGGAATACCTCGCTGGGAACCCACGCATTGTGCATCTCATCGAGGATACCAGGATCCACCTTCTTCCCTCAGTCAACCCAGATGGATACGACAAGGCATACAAAGCG
Seq A exon
GTAATGTGGAGGAATTATTTAGATCTGTTAGATTAATGAAGCAAGCTACTGTTGTCACTTGTTTTTAATTTTCCGGAGATGATATGTTGCGAGCAACTAAAAGAATCAAAATAAAAGATAAAAACAGAAACATCAAAGTAAACATAAGCCACTGAAGCATCTTACCTGGGGAAAAATTTGTATTGGTCTTTATGTGATGTTGGCTAATATGAGGATGCATATGGAAAGGAGGGGCCCCAAGACTTCCACAACAAACCATACTAAGGAGTAAATCAGTGAGAGCACCATCACAGAGAATGAATAATTTGTGCAGCCTGTTTTGTCGTGGGAAAACAAAGCTTAAGCACATAAAAATCTGTATTCCTCTGTAGCTGAAATTTAATATAACACCTTTAAGGAGCACACTGTGTTGGGCATCATGATATTTCAGTCTGGAATAAGACAAACAACAGGGAGGGAAAATTCATGGCTCTGTTCAGGTGCACTGGCAAATCTTCCTGGGCAGTCTGTAGCAGCAGACTAGAATACAAAAGCTGTGCTCACAGCCGTGGAAGGGATGTATGCCATCTCCACTGCAACCTAGGGAAAAATAGTCTTCAGCAGAAACCTTGAAAACAAACCGGAACATTTTGTCTAACCCCAGGTGTTTTGTCTTTGGCTTTACCTCGACCAACTGGAAACATAAAAATCCATGTTTTCATTTCAGTGATAGCAGTAATTCATCCTTCCATTTCTCTGCATGGATCATCCCGAATCACTTTGCTGGGGATCACAGGTTGTCATAATCTGAATGATCATTTCTTTTTCTTTTCTTCTTTTTTTCCCCTTCAATCTAAG
Seq C2 exon
GGCTCAGAATTAGGGGGCTGGTCTTTAGGTCGATGGACTCAGGATGGCATTGACATCAACAATAATTTCCCTGATTTAAACTCTTTGCTCTGGGAGTCTGAAGATCAGAAGAAGAGCAAAAGGAAAGTTCCAAACCATCACATCCCCATTCCTGACTGGTACCTGTCTGAAAATGCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009693:ENSGALT00000015779:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(21.0=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGTACATTGCAGGAGCTCA
R:
CCAGTCAGGAATGGGGATGTG
Band lengths:
343-1180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]