MmuINT0041946 @ mm9
Intron Retention
Gene
ENSMUSG00000030862 | Cpxm2
Description
carboxypeptidase X 2 (M14 family) [Source:MGI Symbol;Acc:MGI:1926006]
Coordinates
chr7:139249317-139251613:-
Coord C1 exon
chr7:139251417-139251613
Coord A exon
chr7:139249497-139251416
Coord C2 exon
chr7:139249317-139249496
Length
1920 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
GCATTCTGAATCTTCTCCAGGGT
3' ss Score
7.88
Exon sequences
Seq C1 exon
GTGAGCCCGAGTTCCACTACATCGCAGGGGCCCACGGCAATGAGGTTCTGGGACGAGAACTGCTGCTGCTGCTGCTGCACTTCCTCTGCCAGGAATACTCGGCGCAGAACGCACGCATCGTCCGCTTGGTGGAGGAGACTCGAATCCACATTCTACCCTCCCTCAATCCTGATGGCTATGAGAAGGCCTATGAAGGA
Seq A exon
GTGAGTACGTTCTAGTCCCACCTCTGCCTGAAACAGGCATGGTATCCCAACTCTAAGGGTGTGCTTAGCCTAGTTCTTGTTTTTGATATCAGTGATGTGTGTGTGTAGGTGTGCACGTGTGCCTATGCATGTGCATGTATGAGAGTACGTGTACCTGTGTGTATATGTATGTGGGGAGGCCTTGAAGTTGATGTTGGGTGTCTTTGTCAATAGCTTCTCTCCTTTAGTTCTTGAGACAGAGTCTCCTGCTGAACTTAAAATGCACTGATTCGACTAGGCCATTATGTCCTAGGGATCTACCTGTTTCTACCTTCCCAGTACCGGGATTGTAGGCACATACTGTTGCACTTAGATTCTTACTTGGGTCCTGGGGATCTAAATTCAAGCTTGCCTAGCAAGTACTTTATCAACTGAGCCATCTCCCCAGCCACTTACCCTTCTTTCTGAGCATCTCATTGCTGAAGCTGGAAGCCTGTGTCTGCAGCTTTTTGCCTGGAGGAGCTGTTTGCCTTCTTTCTGATTGTTTCTTTGCATCGTAAAACGGTTTCTGGGGGGGGGGTGGGGGGGTATACAGAGCAGGAATTAAAACCGATGGTGACACTGAGAGAGGTGTATTCCTAGAGTTCCATATGAGTACTGCCACTATTACACACCCACGGCAGTAGCACCTCAGGTTGGCTGAACACTTTTGAGGTTTTGGTTGTTACCGCTAACATTCTCACCAGTCCCCTAGTGATAACTGTTTTGATTATTCTGAGATATTGCTTATATCATGTGTTGTAATTATCATATGGAATTTGTATATGTCACATGTATATATAAGACATATGTATACAATTACATTAAATCAAGCCATGGATCAATAGTTTGGGATCACAATATTTGGGATAGGACAGAACACTGTCTAAATGTCAGTTCCCGTCAAATACATCAAAGTTCAGCACTTTGTTGTGTTTGTTGGTTCTGGCACAAAGGACTGACTACCTGGATAGTCAAAATAATAACTCCCATCCAAGTACTAACCAGGCCAAGCCATGCTTAGCCTCTAAAATCAGATAAGATTGGGTATGTTCAGAGTGGTGTGGTCAAAGACACACCACTAAAGCCAGAATTCCAGCAGGGCAAGGGGAACACATTGGTACTGCATTGACAGTACGGGATTCTGCAATGCTCCAGTTCCAGACTTCTTCCTTTTTTAGAGGGTTCAGCCATGTAGTGGAAGGTCATGGGAAGGGAGAGATATAAGAAGAGATCTAAGGCTTTTGGGCTTGGCCATATGGCAGGAGTGTTCCTCTGGGAATCTACCTTTGAAGTGAGGTGACTGTGGTTTATCATATGTTCATAGCAGGTTTTTCTGTATTCTCCTGTGATATCTTTCTGGGGCCAAGAGCATTCAGAGACTTTGGAGATGCACATGGCAGACACAGACACAGACACAGACACAGACACACACACAGACAGACAGACAGACAGACAGATACAGACACAGACACAGACAGACACAGACACAGACACAGACACAGACACAGACACAGACACGGACACGGACACAGACACACAGACACAGAGACACAGAGACACAGACACAGACACACACACACACACAGACACAGACACAGACAGACACAGACACAGACACACACACACAGACACAGACACACACAGACACACACACAGACACAGACACAGACACAGACAGACACAGACACAGACACAGACACAGACACAGACACAGACACAGACACACACAGACACAGACACAGACACAGAGACACACACACACAGACACAGACACACAGACACAGACACACAGACACAGACACAGAGACACAGACACACACAGAGACACACACACAGACACATCACACATCTGGGTTCTCCTACAATCCGAGAGCTCTTCGCATTCTGAATCTTCTCCAG
Seq C2 exon
GGTTCCGAGTTGGGAGGCTGGTCCCTGGGACGTTGGACCCATGATGGCATCGATATCAACAACAACTTTCCGGATTTAAACTCGCTGCTCTGGGAGGCAGAGGACCAGCAGAATGCCCCAAGGAAGGTCCCCAACCACTACATTGCCATCCCTGAGTGGTTTCTGTCTGAGAATGCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030862-Cpxm2:NM_018867:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(21.0=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTTCCACTACATCGCAGG
R:
CAGAAACCACTCAGGGATGGC
Band lengths:
355-2275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: