HsaINT0041099 @ hg38
Intron Retention
Gene
ENSG00000121898 | CPXM2
Description
carboxypeptidase X, M14 family member 2 [Source:HGNC Symbol;Acc:HGNC:26977]
Coordinates
chr10:123766973-123768722:-
Coord C1 exon
chr10:123768467-123768722
Coord A exon
chr10:123767153-123768466
Coord C2 exon
chr10:123766973-123767152
Length
1314 bp
Sequences
Splice sites
5' ss Seq
AGAGTATGT
5' ss Score
5.66
3' ss Seq
ACACTCTCACTTGTCTCCAGGGC
3' ss Score
8.95
Exon sequences
Seq C1 exon
GTGAGCCCGAGTTCCACTACATCGCGGGGGCCCACGGCAATGAGGTGCTGGGCCGGGAGCTGCTGCTGCTGCTGGTGCAGTTCGTGTGTCAGGAGTACTTGGCCCGGAATGCGCGCATCGTCCACCTGGTGGAGGAGACGCGGATTCACGTCCTCCCCTCCCTCAACCCCGATGGCTACGAGAAGGCCTACGAAGGGGTAATGGCCCTGGCCCATCTCACCCAATAGGACATGGGCAGCGAGGCCCCAGCTCCAGA
Seq A exon
GTATGTCTGGCCCTAGGGCTATGCAAAATTCCACCTTCCGAGCTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTTGAGTCGGAGTCTCCCTCTGTTGCCCAGGCTGGAGTACAGTGGCGTGATCTCCGCTCACTGCAACCTCTGCCTCCTGGATTCAAGCGATTTGCCTCAGCCTCCTAAGTAGCTGGGATTACGGCCGCCAGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGAGGAGGTTGGCCAGGCTGGTCTCAAACTCGTGACCTAAGGTAATCCGCCAGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTAAGCCACCGTGCCTGGCCACACGAGTTTTATTTTTGAGTGTCTCTGCTGAGGCAGGGAAGCCTACAAGGTTTATGAAAAGTGCAAAGCAGGCATTGAGAATGATGGTGGCCTTGAGAGGTGGACATGCCGACCAACTGGAGGACGTGAAGATGAACATCAATATTGCTATATACACAATGATAATGGAATCCAATAGTAACACTTTATGTTGGCTGAGGACTTAATCATGGCATGTGTTAGCCTTGATTATTACCTTTAATCTTCTCATCAGTCTTCTGAGGATAGTTGTTTTATTATTCTGATACGTTCTTTACATTTTGTGTTCCAGTTATGATATAGAATGTATATAGGTTATAGGTGTGCATAGAATATGCATATGTACAGAATTATGTATAAATAGAACATATAGTTAGTATTATGTTGTGTTGTGTATTGACAGTGATATATCTCAATACCTGGGAATAAAATGGAAAATTATATTAAAACAAGGGTACCTATCAAATGCAAGCTTTACAGTATAGAAATGTGGTCACATTTATTGGTGCAGATATAGTCAGTTAGGAATTTGCATTGCTAAATAGTGAGCCAGAATCATGGGCAGGCAGGGAGAATGCATTACTGTGGTGGCCATTGATGAGTTCATTGCTACTCAGAGGTTCACCTGGCCAGTATAGAAGAGAGGAAGGTAGGGGTGGAAGAAGGAACCTAATGCTTTTTAAGCACTTCCATGTGGCAGGGGTGGTTCTCTGCATTCCCTCTTTGGAGTAATTTGGCTGAACTATCTATCACCCACCAAATATTAATAGGAAGTTTTTCAATATTCTCCTTTAGATGCCATCTTTGGGTCAAAGGGCATCTAGAGGCTTAGAGACATTCCCCAAGGGGAAGTGGAGACAGATGCATCTTGTATGGTAGAGGGTCCGCGTTGTCCTGCAGCCTGTGCATTCTTCACACTCTCACTTGTCTCCAG
Seq C2 exon
GGCTCGGAGCTGGGAGGCTGGTCCCTGGGACGCTGGACCCACGATGGAATTGACATCAACAACAACTTTCCTGATTTAAACACGCTGCTCTGGGAGGCAGAGGATCGACAGAATGTCCCCAGGAAAGTTCCCAATCACTATATTGCAATCCCTGAGTGGTTTCTGTCGGAAAATGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121898:ENST00000368854:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(21.0=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCCGAGTTCCACTACAT
R:
CTCCCAGAGCAGCGTGTTTAA
Band lengths:
351-1665
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development