GgaINT0045901 @ galGal4
Intron Retention
Gene
ENSGALG00000007511 | ITGB2
Description
integrin beta-2 precursor [Source:RefSeq peptide;Acc:NP_990582]
Coordinates
chr7:7182101-7186628:-
Coord C1 exon
chr7:7186535-7186628
Coord A exon
chr7:7182168-7186534
Coord C2 exon
chr7:7182101-7182167
Length
4367 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
GGATGCCTTTCCTCTTGCAGGAA
3' ss Score
10.96
Exon sequences
Seq C1 exon
CTCAGCTGCTGCTCCCAGCCAGGCAGTGCAGCCAGGGGGCTACCAGCCTCACTGCAGTCCCAGAAGAGGAGCTGAAGGGAAGGCTTGATGTGAG
Seq A exon
GCAAGTACTCTTTCACTTTTGTGCACCTCCTTTCTGGGGGGAGGTGGATGGGCAATGGAGAAGTTTCATAGCCATGGGGTTTCCATGAATTTGTTTTGTAACTCTTGATCCAGCTTTGTGCAATGTTTGGCATGCTGCAGCCTGGCATGTGGCCTTCCCAAAAGCAGACTTGCCTTATCTGTGCATTTCTGCTTTCAGAGGAAGGAGTGAGCGGAAGCACAGGCAGTTATTAGGGGAGGGTTTCAGACCCCAAACAGCTCCTTCCTCACCCACCTGCGAGCTTGGGAAGCAGCAGAGGCCCAAGGTGCTCCTGTTGAATCCTCTCAAATGCAGCTGAGGGCCATGCCAGTTTCCACCCAGGGCTGTGTCACCTCTAGCACATGGGCATAGGGATGTTATCTGAGCACATCACACTTTGTGCCCAGAAACAACCCCAGCTTCGTTGTGATAAGGTGTTGATTGGAAAGCAGGTGCAAGCAATCTGTCCCATTAGGGCCTGCTAGATGGGGGATGCCTTTGCCTCTGTGGAATGGGGAAAAAGAGCTAGGAGAGAGGGGGCAGGACCCTGCTCTTCTCCATTTCCCCCTGTGCGCATTGCAGTCTGCAAACGACCTCAGAAAATGCATAGTGGAAGCAGGGGATACAGCAGAGGATGCATATGAACTTACCCCAGAGAAAGCAAGTCCTTTACCAAGCCTCTAAGACAGGAAAAAGCTTGCTTGCTAATATAGCAAAGGGAAAGCGTAGGTCCTTTGAAGTAGCTCTCATGTGATGGAGAAGCCAGAGAGCTGCTGTTCGGTTCTGAATCATTCTCAAGCAGACAGACCTTCATTTTCGATGATTTTTAAAGGTCTGGCTCCTTGCCTCACAGGGAGATGAAAAGCAAATGCGTGAACATTCACAGAGATATCAAGCCCTGTGGCTGACACAGGTGCTAGTTCCTGTGCAGAAAAGCGTGGGAAAGCTATAATGTTGCATTTCTCTACCATTATTGTCACATCCTGCTTTGCTCAGTGGTTTTATAGTGAGTTGTAACTAAACTCAGTGGGCTAGCGACCACAGTGCAGGACCTAATTTCTTGCATGAGAAGCTGGAAGTCTCCCACTTTTGCAGTTTGGTCGCTGCAGGCAGGAGGCATACAGCTTCACTATGCTACTGCCAAATGGGTGATGCAAGCTGAGAGACTTCACATAAAGCACCAGAGAAACAAGGAACAGCTCCTCTGTCCTAAATGGTGTATGATAAACAGGTTCCTGCTTAGCCTAGAACAGGTGCAACAGGATATTTGCACCAGTGACAGAAGGAGGCTGCAATCAGCGACTGGAACAGACCCTGCAAGGCTGTTCTTGTATACCTATATCTACCTTTCTATAAATATATATTTTTAGATAGAAAGATAGATGTATGTATAAAGATAGAGATGATGCAGGCAGACCCTGCAAGGCTACTGATGTTGACGTGTTTGTATATAGATTCATACATACCTATATATAAATAGATAGATATGTGTATATGTATATATATATATATATATTGCACACGCATATTTTGCAAAGAGGAAGTGCCTCAGTGTCTCAGCCAGTCCTAGCCCTCTTGATGAATGTCTACCTTGATGGGAATTACCCATAACACCAAACTAAGTGAAAGAAGGAACAGCCACAAGCCAAGTGATATGCATCTCCCTGCCTTGCTGTGCCCTATGGAGCTCATTTACACTCTGTGCATGGCAGCCTCACTGTTACAGGCAGATGATGCAAGCATGCCAAGAGTCCTCCAGGGATACTGGGCATGGGAAGATGTCCTCCCATTTTGAAAGAAGATGAAGATAATTAGCAAAGCAACAAAGGACGGTTGTGGCCAACAGTCTGCAAGACCCATCTCTGCTGTTGAACTCTCATCTTATTTATAGAAATGAGACAGCAGCTAGCTTTGACACTTCCCTTTCAGCCCTATTTATAAATCCCAGCTTGTGGACAGGAGGGTAGGCTTTGTGCACCCCTCTGCTTGCTGTGAGAAGCAAACCTGTCCCTGGCAGAGCACAGCTGGGAGCAGTGTACCCTTAGCAGTGTAAATCTGACACTGAGCCAAATGGATGGCAAGATCAGATGGAGAAAACACTGCAGGGTCTCTGCCTGGGCCCTGCTAGCATGAAGTCAGACAGAAAAGCTGTTCCCCTTTCTCTAAGTACTGTGAGGAGGCAGACAAAAGCAGAAGCCCCATTTGTTTCTTTTGAAAGTCACCCTACATCACATACATGCTGATCCACCCACATAGCAGTGAATAATTTCCTTTTGCAGCAGAAGCAGCAGCAGCGGTGAGCTTTCTGCTGCTGCAGTCCCCTAGCATCAGGGTGTGTTTTACACCCCCGCAGTGGGAAAAGAAACAACTGTTAGCATTATAAGGGCACAAAATGAACCCTATAGTACAAAACTCATTATCAAACAGAGCTGGGCTTATACTGAGTGTGTTTCTGGGGTCTGTGAGGTATTTTTAATCCTGTTGTAATTGGAAACTTACTCCCTTTTTTGGAATGAGCCTGTATGTATGAACCTACTGCCTCCAGCAAGCCAAGCACAAGGAGGTCACAGGGCCTCTGTCCGTGGCTAATCTTGTGGCTTATATGGCTCCCTTCTGGCCTAAATGAGTGCAAAGGGCACATGTCCACACGCAGTTATGGGCTTTCCTTCCATGAGAGGGAGAGAGCTGGCACTGGGAGTCCCACTATGAGGCAGGCAAGAGGTGCACCCACTATGAAATCCAGCCTGAGCTAGCTTGTGTGAACAATGAGGGTTTTCCTTCTGCACCTCCCCCAGAGCCCAGTCACCTGTGGAGTGCTCACGGAGATGCAGTGGGCATGGTCACAGGCAAGGATGGAGCTGCAGCCCCATCACAAAATGGCACAGCAGAGCGGAGTCCTGGGCTCTGCCACCATGACCAGGTGAGCACAGAGTCACCTCTGCCTGTCTGTGCAGAGAGGTGACAACCTCCAGAGCACTGCTGGGGAGCTGAGCTCTGAGGTAGTCATCTCTTAAGGCTGCAGATCTTCATACCCTGACAGTCTTTACTCTGCTGCTGCAGCCCCATCACACCTCCAAGTCCACAGAACAGCCAGGCATCAAACCCCAGCGCGCAGTTGTCACAAAATGATGCCCATCTAATCTCTCTTAGCATCTGATCTTTCTGATTAGCGTCACCCTTGACTTGTCCGGTGCCTCACAGCAGCTGACAAGCTGCAGACACATCCTTGTGCCTCAGGAGAAGCTCTGAGCAGCCATATTTACCACTCTGGGTTTGGTGCTTTCTGCGCATTTCTCTTGCTGCTTTCTTCCCACCCCAGCTGCTCAGACTGTCACGTTCTCAGGAGAGGCTGGCGGTGCTCTGCAGCACAGGCAGGAACCAGGGAGGAGCTGTCTGATTGCTCAGGGTGGCATAAGAGCCATTTCAAAACCAATGACATGTCCTTCTAATGTTATTTCTATTATTGCTGAAAACGGAAGTGTTCATTTTCTTCCCTCTTTTTTTCTCTATTAACAGTTTCCTCTTTTCTCACATCCCCGAATATATCTATGTTGTAAGGTCACAGTTCTGTTGGGTTTTGCTCCAGGACTGTGCCTTTTTGCATTATATACATATACAAACATAGATGGAGAAGAATCTGGATAAATATCACATCAGTCTATGTAGCAGTTCAACTGAAGCTGTACTGATGCAGTGCCAGTTGCTGCTCTGCTGACTTTCATGTTTAGCCTAAAAGCTATGTTTAGCTGGATACCAATGTATTTTTCTAAGAGCATGCAAGCAGTCAGTTGTGGTCATGGTCTCAGGACCTGCCCTGCTGTGGGATGGAGACATCCACTCGGTGCTGCTGGAGCACCTCTCCTATGGAGAAAGGCTGAGGGAACTGGGATTGTTTAGCTTAGAGAAGAGGAGGCTCTGAGGAGACCTCATTGTGGCCTTCCAGTACTTGAAGGGAGCCTATAAACAGGAGGGGAAACAGTTGTTTATGAGGGTGGATAGTGAGAGGACAAGGGTGAATGGTTCTAAACTGGGACAGGAGAAGTTTAGGTTGGATATTAGGAAAAAGTTTTTTACACAGAGGGTGGTGATGCACTGGAACAGGTTGCCCAAGGAGGTTGTGGATGCCCCATCCCTGGAGGCATTCAAGTCCAGGCTGGATGTGGCTCTGGGCAGCCGGGTCTAGTGGTTGGCAACCCTGCACATAGCAGGGGGTTGCAACTCGATGATCATAGTGGTCCTTTTCAACCCAGGCCATTCTATGATACTATGATCTCTGCAGCTGCTTTCTGTGGGATTTGGAGGCTCCCTTCCCTGAGGCTGCTGTCACAAGGATGCCTTTCCTCTTGCAG
Seq C2 exon
GAAATGCCCCGTGACTGCTGCCTCTGGCTGCCAGCAATGACCTGGGTGCTGTTGCTACTGACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007511:ENSGALT00000012144:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]