MmuINT0084105 @ mm10
Intron Retention
Gene
ENSMUSG00000000157 | Itgb2l
Description
integrin beta 2-like [Source:MGI Symbol;Acc:MGI:1277979]
Coordinates
chr16:96438740-96443619:-
Coord C1 exon
chr16:96443540-96443619
Coord A exon
chr16:96438801-96443539
Coord C2 exon
chr16:96438740-96438800
Length
4739 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CCAAGCCCTTCCCCCTACAGGAC
3' ss Score
10.48
Exon sequences
Seq C1 exon
CTGCCACAAGCGTCCAGAGAGCTATAAGGAGCTGAAGAATCTCCAGCCTCTCTGAGCCAAGGCCTCCAGGGAGCAAAGTG
Seq A exon
GTGAGTGGGGGCCCTGTGTCCCTGTGACTCTTAAGAGGACATCTCAGTGTTAGTCTTTCCCAAGCAGCAGGAAAAAGGGTCTATCTGACCCCACTCATGGAGTGGATCCTGTGGCCTCTTCATAACCCTAGTCCATGGTGTCTGGAAGAAAACTAATTGACAGCTATGTGTACTGATACCCATCAAGTAGAGGCACCATGAAACCTTCAGGCAGAACCCTGGAGTGTGATAGGAACACCCATGGCTGGGGACATGGGGTCATACCCATGGCTGGGGACATGGGGTCACACCCATGGCTGGGGACATGGGGTCAGGCTGGCATAGAGTAGGCACAGATGCACAGGCCTACAGCTTTGGGTTTACTATCTCATACACTATCTGGGCCTCCAGAGACTTGGTGGCTGCAAGACCCAGCAGAGATGGGGAGAACCCTCTTGGGGGAGGGCTTCCAAGCCCCAGGCTGGAGATGGAGGATTCAGATGTGACTGGGAAAATTCCTAGGGACATGTGCAGGCGTGAGCTATGTCTGCCTCTTCCTGCTCAGCTAATGTCCATCTCTCTTTACACCTCTCTCTCCAATGAATTTTCTTCCAGACTTAGGTGGGGAACTGTATCTAAGTGATAAGCATGTCTGTTTGTGCATGTGTGCACGTGTGCTATGTACATGTGTACATGTGAAGTGAGCAGCTTGCATGCACATGCCTTGTCTATGTGCATGTACAATTATGTCTGTGTAGTATATATATATGTGTGTGTGTGTGTGTGTGATATGTGTGACATGCATGTACATGCTCATGTGTATGCATTACACATATGTGTTTGTGTGGTGTGTGTATACATGTCTGTAGTCTGTACATAGAGAATATATATGTGAAGTAAGCATGTGTGTCCAGCATGTGCCTTTCCTGGGGTATTATCACGTGACTCCCCCGGTGCTCAGGTTTTAAAAGGTCTGTCCTGGTAGATGTCATGCTAAGTAAGCATTATGTTTAAGGGAACAATGTTGGTGTGGGATTCTGGTCCAGATGGGGCTAGCCTCCCCACCATGGTCAGCTTATAAGAGCTGTTCTCAAGGTATCTGGCAGGCAAAAGGAAAGCTGAAATCATGCCTCTGGTTCCTGGGCTCTTCTGGGATCTTATAGGATCTCAACTCTGTAGCCTACCTCCTGCCCCCATCACCACCCCAGAGATTGGCTCATCCCTACTGTAGGACTGGGTCCCTATACTGCTGTCCTTCCAGAAGTGGGAAGACAGCACACACAGCCTCTGCCTCTGATAGCACCCGAGGCAACAGCCACGACAGGAGGGGACTGGCGTGAACTATGAGGGAAACATAGAAGCCATAGCACCACCCACCTCCCTGCAACAGAGACTCCACACTTGTGACATGGAGGCCCACGCCAGACTGTGAGCCATGAGTGGAAAGAAGAGCTGCTGAGAGACTCTGGGACACTGTCATCAGGCCAACTCCCAGAAAGGATGTAATGCAAACTGAAGCTGCATGGGAAAGGGTGGCCTGCTGCCAGGATGGACACAGTGGTCATGGGGGCCCTGTTTCTACTGGACCAGTGACCAATTCCCCAGGTTGTTCCTGACCCCAGTGGGCCTTCCGTAGTCCCAACCCTGCTCATAACTTGGTACCACAGGCCTTATTATTTCAGATGTGGACATGGGGCCAGAGGGCAGGTCTCTAGGATGCTCAGATCTAGCCAGTAGGAGATACAGAGACCTCCATGCCTAAATACTGCTGTTATAAAAGCTTCAAGGATGGGTTTTTGTTGTTGGTGGTGGTGGTGGTGGTGGTGGTGGTAGTTTGGTTTTGGTTTGGGTTTGGTTTTTGGTTTTGATTTTTTTTTTTTTTTTTTTTTTTTGTCCAAGCCCCAGGCAGGACTCTCTTTGTACTCTAGAGTCTGAGAGTACAGTCAGCTCCAGGAGAGCAGCTGGCTTTTAAGTAGCATCCATCGCACCTGAAACATTCGGAGTGGAAACGCGGTGGGAATGGGGACAGTGAAGACGCTGAAGGGACCAGCAGGGGCAGAGTCCAGTAATCTTTAAGAATAGCTAGATGCTTCCAGTCTTGTACCAGGAGAGACCAGAAAGCACCTACCTGTGAGAGAGTGAGTGAGTGGGAGCGATTCGGTGATTGGTAAGCAGGGGTCGCACAAGTCCATGAGGTCACAGCCCCCACGGTTGCTGATGTCATGGTATAACTCTCTTCAGGAATGTATATAGTGCGTACAAAAGAGCCAGCGGGTTTTGGAATCTGAGGTCTCAGGCAACACATCCGCTAGTACAGAACTGGGAGCTCCTCTAAGACAGGCAGTGGATGAAGCTAGTTAAGGATTTCCGGATGAATTGGGGCGGGTCTTCCAAGGCCCCACCCCTAGCAGAGGGGCTATTGGCATTTGATGGCTGCAAGGGGCGGGGAGGGGAAGACTGGGAGGTTGCCCATGCTCCAATGAATGACAGCATAGTCGCATGCAAATGAGAAGCGCTAACTGAATCCAGTGGGTTAAAAATAATAAATAATTAAAATAGCCATTAAGAATGCTTGCTGCTTGCCTAGCAACCCCAGTTCAGTACCCAGAGCACACATGACATCCCCAGGGAATCCGATATCCACTTCTGGCTTTTTTGAGTACCCGCACACATGTGGCATATATACATAAACACATACACATAAATTTAAAAGTTAAGTAAATATTAAAATATAGAGGGAGGGAGGTGTGGGGGGATGTGCCAGGAAGTGGAAGCAGATATGATTAAGTTACACTGCATACATGTATGAAATTCCTAATAAATAGAAATGTTATCTTTAAAAGATGTCACTATACACATGGAAGTAGACTAGGACACACAGACAGGATTCCTGGAGAGACTGAGAAAGCTGGTGATGTATTTTGTACCCTGGAGCCCATGTGCCCCCAGTTTTTTGTGTGTTTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATGAGTAAAGGCTGAAGAAACTCCATCTTGGCACTGGGCACGGTGTCAATGTTGGGTGAGAGCTGATCACCATAAGCCCTTGTTTTTATTTTCCTTAGGACAAGGGTGACCATGGGATCCCACTTGCTCTCCCTCCAAACTCCCCTGGGGCTCTCCAGTCTTGCCCCTGCTCACTTCCCTGTGGCATCATGACATGGGTACTTTTGCCCACGGAGCCTCTGGCTTCTCTGGGGCCTGTTGGAGGATTCTGTGACTGGGGAAAGTTTACAACAGGAAGTCGTCTGCAGTTTCTAGTTAGTCTCAGCTCTGGGGCTTGAATTGCCCTCACTGCTGTCTGGGTCTCCTCTTCCCAGCTGTAAGCACTGGTCTTCATGGGAGTGTGTGAAGTGGGTGGGGTCTGTTTTCCCTCTCACGCCTCCCTCAGGTCTCATAACCCAGGTGTTCAGAGCTTGAAATCTCTGAAAGGGGTGGGGGAGGGTCATCATTCAGTGCTGGTGTTGCTGCCAGGGGAGGGGACCCAGGTCCTCAACAGGATCTCCACAAAAGGAAAATTGCCAAAGCCCAGAGCAGAGGCTGGGGTAACGTTACCTTCACCATTTCCTGAGAATGTGCTGGGTTGTGCCATCACTTCCCCGGGTGAGACCATGGTCTTTGCTACAGATTTCCTGCGGGTTGGTGGGTCCTGAGCTTCCTTGTGTGGCCACTTAAGAGTTCTGCATTTCCAGTGTTGTGTAGGGACTTCCTGTCTGTCATCAGCCTGCAAGGTGAGGCTCCCTGGCTATTCTTTGTAATAGTCACAGTGCCCACATAAGCAAGGGGCCGTGTGGGGGAGGGGAGGTGCACCCACCCTCCACCCCATCAGACTGCCTGTAATCAGGATATAGGGACACTACAGTCTGTGTGGGTCAGTCTTGCTATAACTCGGGCCTCCTCCTGTTCTCTAGACAGCGTAGGGTTCACCCAGGTCCATATCCCTATTCAGAGATACAAGGATGTTGCATGCTGTCACCAGCGGGATTTGGGGGGTTTTGGTTTCTGCTGGTGGAATACAATCAGTGGCCTTGGAAGGAGACTAAATCAGGAAAGTCCTCGGGAGGAACTGGTGTGAACTCAGTCCCTGGAAAACAACTGGCCAACCCTGATGCTGTTGACTCCAAGAACACATTAAGGACAGCTTAGAGGCTGTCAGGGATGGGGCAGGGGAGCATCTAAAATCAGCCGTGGCCTAGAGCCACACTGCACTGCCTCCAGCATCACAGGGGCAGAGAGAGTCTCAGCTTGTAGCCCAGGCTCCACACTTTGAAGACTTAACCATACAAAGTTTATAGCTCTGGCTTCGGCAGCATGGAACATGTGTATACAGGCTGCGGGCTGTATTTGTAACATGCGGTGGGTGTGCTACGTCTGTGATGACATATGGCATGTGCTATGTTTGTGTGTGTCTATGGTAATATGGCATATGTCTATATAAGTGTGTGCCCAGTAAATTCTGGGTACTCTTGGTACCCAGTCTTCTATGCTTGGTGCCCCAGGCACCTCAGTAGGCATATGACCCCACCTTTGTCCTTCCCTGAACCTGAAGACATTGGTGCCTGACTTGTATGGAACCTTTGATTCTTACACCCTGTGGTAGCAAGGACAAGATCTTCTCTACTCTACCCTCAGCAGACATTTACACCCTGCAGTTCAGACAAGCCAGGAGAGGATCTGTGACTCCTAGAGTCACCAAGCCCTTCCCCCTACAG
Seq C2 exon
GACATGCTGGGCCAGTGCACTCTGCTACCTGTCCTAGCTGGGCTGCTGTCTCTGGAATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000157:ENSMUST00000000161:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types