MmuINT0084105 @ mm9
Intron Retention
Gene
ENSMUSG00000000157 | Itgb2l
Description
integrin beta 2-like [Source:MGI Symbol;Acc:MGI:1277979]
Coordinates
chr16:96660347-96665221:-
Coord C1 exon
chr16:96665147-96665221
Coord A exon
chr16:96660408-96665146
Coord C2 exon
chr16:96660347-96660407
Length
4739 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CCAAGCCCTTCCCCCTACAGGAC
3' ss Score
10.48
Exon sequences
Seq C1 exon
ACAAGCGTCCAGAGAGCTATAAGGAGCTGAAGAATCTCCAGCCTCTCTGAGCCAAGGCCTCCAGGGAGCAAAGTG
Seq A exon
GTGAGTGGGGGCCCTGTGTCCCTGTGACTCTTAAGAGGACATCTCAGTGTTAGTCTTTCCCAAGCAGCAGGAAAAAGGGTCTATCTGACCCCACTCATGGAGTGGATCCTGTGGCCTCTTCATAACCCTAGTCCATGGTGTCTGGAAGAAAACTAATTGACAGCTATGTGTACTGATACCCATCAAGTAGAGGCACCATGAAACCTTCAGGCAGAACCCTGGAGTGTGATAGGAACACCCATGGCTGGGGACATGGGGTCATACCCATGGCTGGGGACATGGGGTCACACCCATGGCTGGGGACATGGGGTCAGGCTGGCATAGAGTAGGCACAGATGCACAGGCCTACAGCTTTGGGTTTACTATCTCATACACTATCTGGGCCTCCAGAGACTTGGTGGCTGCAAGACCCAGCAGAGATGGGGAGAACCCTCTTGGGGGAGGGCTTCCAAGCCCCAGGCTGGAGATGGAGGATTCAGATGTGACTGGGAAAATTCCTAGGGACATGTGCAGGCGTGAGCTATGTCTGCCTCTTCCTGCTCAGCTAATGTCCATCTCTCTTTACACCTCTCTCTCCAATGAATTTTCTTCCAGACTTAGGTGGGGAACTGTATCTAAGTGATAAGCATGTCTGTTTGTGCATGTGTGCACGTGTGCTATGTACATGTGTACATGTGAAGTGAGCAGCTTGCATGCACATGCCTTGTCTATGTGCATGTACAATTATGTCTGTGTAGTATATATATATGTGTGTGTGTGTGTGTGTGATATGTGTGACATGCATGTACATGCTCATGTGTATGCATTACACATATGTGTTTGTGTGGTGTGTGTATACATGTCTGTAGTCTGTACATAGAGAATATATATGTGAAGTAAGCATGTGTGTCCAGCATGTGCCTTTCCTGGGGTATTATCACGTGACTCCCCCGGTGCTCAGGTTTTAAAAGGTCTGTCCTGGTAGATGTCATGCTAAGTAAGCATTATGTTTAAGGGAACAATGTTGGTGTGGGATTCTGGTCCAGATGGGGCTAGCCTCCCCACCATGGTCAGCTTATAAGAGCTGTTCTCAAGGTATCTGGCAGGCAAAAGGAAAGCTGAAATCATGCCTCTGGTTCCTGGGCTCTTCTGGGATCTTATAGGATCTCAACTCTGTAGCCTACCTCCTGCCCCCATCACCACCCCAGAGATTGGCTCATCCCTACTGTAGGACTGGGTCCCTATACTGCTGTCCTTCCAGAAGTGGGAAGACAGCACACACAGCCTCTGCCTCTGATAGCACCCGAGGCAACAGCCACGACAGGAGGGGACTGGCGTGAACTATGAGGGAAACATAGAAGCCATAGCACCACCCACCTCCCTGCAACAGAGACTCCACACTTGTGACATGGAGGCCCACGCCAGACTGTGAGCCATGAGTGGAAAGAAGAGCTGCTGAGAGACTCTGGGACACTGTCATCAGGCCAACTCCCAGAAAGGATGTAATGCAAACTGAAGCTGCATGGGAAAGGGTGGCCTGCTGCCAGGATGGACACAGTGGTCATGGGGGCCCTGTTTCTACTGGACCAGTGACCAATTCCCCAGGTTGTTCCTGACCCCAGTGGGCCTTCCGTAGTCCCAACCCTGCTCATAACTTGGTACCACAGGCCTTATTATTTCAGATGTGGACATGGGGCCAGAGGGCAGGTCTCTAGGATGCTCAGATCTAGCCAGTAGGAGATACAGAGACCTCCATGCCTAAATACTGCTGTTATAAAAGCTTCAAGGATGGGTTTTTGTTGTTGGTGGTGGTGGTGGTGGTGGTGGTGGTAGTTTGGTTTTGGTTTGGGTTTGGTTTTTGGTTTTGATTTTTTTTTTTTTTTTTTTTTTTTGTCCAAGCCCCAGGCAGGACTCTCTTTGTACTCTAGAGTCTGAGAGTACAGTCAGCTCCAGGAGAGCAGCTGGCTTTTAAGTAGCATCCATCGCACCTGAAACATTCGGAGTGGAAACGCGGTGGGAATGGGGACAGTGAAGACGCTGAAGGGACCAGCAGGGGCAGAGTCCAGTAATCTTTAAGAATAGCTAGATGCTTCCAGTCTTGTACCAGGAGAGACCAGAAAGCACCTACCTGTGAGAGAGTGAGTGAGTGGGAGCGATTCGGTGATTGGTAAGCAGGGGTCGCACAAGTCCATGAGGTCACAGCCCCCACGGTTGCTGATGTCATGGTATAACTCTCTTCAGGAATGTATATAGTGCGTACAAAAGAGCCAGCGGGTTTTGGAATCTGAGGTCTCAGGCAACACATCCGCTAGTACAGAACTGGGAGCTCCTCTAAGACAGGCAGTGGATGAAGCTAGTTAAGGATTTCCGGATGAATTGGGGCGGGTCTTCCAAGGCCCCACCCCTAGCAGAGGGGCTATTGGCATTTGATGGCTGCAAGGGGCGGGGAGGGGAAGACTGGGAGGTTGCCCATGCTCCAATGAATGACAGCATAGTCGCATGCAAATGAGAAGCGCTAACTGAATCCAGTGGGTTAAAAATAATAAATAATTAAAATAGCCATTAAGAATGCTTGCTGCTTGCCTAGCAACCCCAGTTCAGTACCCAGAGCACACATGACATCCCCAGGGAATCCGATATCCACTTCTGGCTTTTTTGAGTACCCGCACACATGTGGCATATATACATAAACACATACACATAAATTTAAAAGTTAAGTAAATATTAAAATATAGAGGGAGGGAGGTGTGGGGGGATGTGCCAGGAAGTGGAAGCAGATATGATTAAGTTACACTGCATACATGTATGAAATTCCTAATAAATAGAAATGTTATCTTTAAAAGATGTCACTATACACATGGAAGTAGACTAGGACACACAGACAGGATTCCTGGAGAGACTGAGAAAGCTGGTGATGTATTTTGTACCCTGGAGCCCATGTGCCCCCAGTTTTTTGTGTGTTTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATGAGTAAAGGCTGAAGAAACTCCATCTTGGCACTGGGCACGGTGTCAATGTTGGGTGAGAGCTGATCACCATAAGCCCTTGTTTTTATTTTCCTTAGGACAAGGGTGACCATGGGATCCCACTTGCTCTCCCTCCAAACTCCCCTGGGGCTCTCCAGTCTTGCCCCTGCTCACTTCCCTGTGGCATCATGACATGGGTACTTTTGCCCACGGAGCCTCTGGCTTCTCTGGGGCCTGTTGGAGGATTCTGTGACTGGGGAAAGTTTACAACAGGAAGTCGTCTGCAGTTTCTAGTTAGTCTCAGCTCTGGGGCTTGAATTGCCCTCACTGCTGTCTGGGTCTCCTCTTCCCAGCTGTAAGCACTGGTCTTCATGGGAGTGTGTGAAGTGGGTGGGGTCTGTTTTCCCTCTCACGCCTCCCTCAGGTCTCATAACCCAGGTGTTCAGAGCTTGAAATCTCTGAAAGGGGTGGGGGAGGGTCATCATTCAGTGCTGGTGTTGCTGCCAGGGGAGGGGACCCAGGTCCTCAACAGGATCTCCACAAAAGGAAAATTGCCAAAGCCCAGAGCAGAGGCTGGGGTAACGTTACCTTCACCATTTCCTGAGAATGTGCTGGGTTGTGCCATCACTTCCCCGGGTGAGACCATGGTCTTTGCTACAGATTTCCTGCGGGTTGGTGGGTCCTGAGCTTCCTTGTGTGGCCACTTAAGAGTTCTGCATTTCCAGTGTTGTGTAGGGACTTCCTGTCTGTCATCAGCCTGCAAGGTGAGGCTCCCTGGCTATTCTTTGTAATAGTCACAGTGCCCACATAAGCAAGGGGCCGTGTGGGGGAGGGGAGGTGCACCCACCCTCCACCCCATCAGACTGCCTGTAATCAGGATATAGGGACACTACAGTCTGTGTGGGTCAGTCTTGCTATAACTCGGGCCTCCTCCTGTTCTCTAGACAGCGTAGGGTTCACCCAGGTCCATATCCCTATTCAGAGATACAAGGATGTTGCATGCTGTCACCAGCGGGATTTGGGGGGTTTTGGTTTCTGCTGGTGGAATACAATCAGTGGCCTTGGAAGGAGACTAAATCAGGAAAGTCCTCGGGAGGAACTGGTGTGAACTCAGTCCCTGGAAAACAACTGGCCAACCCTGATGCTGTTGACTCCAAGAACACATTAAGGACAGCTTAGAGGCTGTCAGGGATGGGGCAGGGGAGCATCTAAAATCAGCCGTGGCCTAGAGCCACACTGCACTGCCTCCAGCATCACAGGGGCAGAGAGAGTCTCAGCTTGTAGCCCAGGCTCCACACTTTGAAGACTTAACCATACAAAGTTTATAGCTCTGGCTTCGGCAGCATGGAACATGTGTATACAGGCTGCGGGCTGTATTTGTAACATGCGGTGGGTGTGCTACGTCTGTGATGACATATGGCATGTGCTATGTTTGTGTGTGTCTATGGTAATATGGCATATGTCTATATAAGTGTGTGCCCAGTAAATTCTGGGTACTCTTGGTACCCAGTCTTCTATGCTTGGTGCCCCAGGCACCTCAGTAGGCATATGACCCCACCTTTGTCCTTCCCTGAACCTGAAGACATTGGTGCCTGACTTGTATGGAACCTTTGATTCTTACACCCTGTGGTAGCAAGGACAAGATCTTCTCTACTCTACCCTCAGCAGACATTTACACCCTGCAGTTCAGACAAGCCAGGAGAGGATCTGTGACTCCTAGAGTCACCAAGCCCTTCCCCCTACAG
Seq C2 exon
GACATGCTGGGCCAGTGCACTCTGCTACCTGTCCTAGCTGGGCTGCTGTCTCTGGAATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000157-Itgb2l:NM_008405:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: