GgaINT0046657 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:23558077-23559030:-
Coord C1 exon
chr7:23558884-23559030
Coord A exon
chr7:23558178-23558883
Coord C2 exon
chr7:23558077-23558177
Length
706 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
ATCTTTGTTTCTTCCCGCAGGTG
3' ss Score
13.73
Exon sequences
Seq C1 exon
GCAGCAGACTCCCGGGACTCCCTCTCCATGGCGCTGTATTCCCAGTGCTTCTCGTGGCTCATTAGCAAGATTAATACGAAGATCAAAGGCAAGGAAAACTTTAAGTCTGTGGGCATCCTGGATATCTTTGGCTTCGAGAACTTCCAG
Seq A exon
GTCAGGATTTTGTCTTTCACAGGGTGTGTTGGTTTTGGAGAGGTCAGTTGACGCAGGGAGGATGTTTTGTAGGTTTGTATCCTGTGTAAGATAGCATAGGGCATTTTGGGACTTGTCCGCTGTCTCCTCCCTCTGGGAGTGGCAAAATCTGTTTAGCTGCCCATTTTTGGTACCTGTGTTTGTGCAGGCTGATGTTCAAGGTATGATTTGTGACACAAACTCTCAGCAAATATAATTAATACTACCTTAGTTTTGCCTATATCTGCTTGCTTTGTACTTACGTGCTAAGTAAACGTCCAGTTCTTACATGTATGTTATCTGGTTACATCCCTTTTGCTGAGAATCTAGTGTGCAATGCTCCTGCTTGCAATTATGAGGAACGTATGGTGAGCAACTATCTAGTGACTGCTCAGACATCTCAAAGAAGAGAATTCCCAGTGGCCTAACCTTTAAAGAACAATGTTTCTTTCATCCTAAGAAATGGGATTGCCTTCAGCATCCTTTACTACCATTTAGGCCTAAAGCATGAACTACAGAAACTGTTCTCCTGGTGGCCCTCCCCGTACTGTCTTCCTTGTGCCCGTTGACACCCTTGTCCCTGTGCTCTCTGGCTTTGTTCCTGGTCTGGCACCTTCCCTGTAGCTGTTGCAGGAGATAGTGCTGGGACAAGACTATTAAGTTTTAAAATCTTTGTTTCTTCCCGCAG
Seq C2 exon
GTGAATCGTTTTGAGCAGTTTAACATTAACTATGCAAATGAGAAGCTCCAGGAATATTTCAACAAGCATATCTTCTCCTTGGAGCAGCTGGAGTACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011172:ENSGALT00000018214:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGACTCCCGGGACTC
R:
CTGTTGTACTCCAGCTGCTCC
Band lengths:
247-953
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]