HsaINT0108159 @ hg38
Intron Retention
Gene
ENSG00000145555 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr5:16763655-16764396:-
Coord C1 exon
chr5:16764250-16764396
Coord A exon
chr5:16763756-16764249
Coord C2 exon
chr5:16763655-16763755
Length
494 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
TGAATGCTTTCCCCCCTTAGGTT
3' ss Score
10.64
Exon sequences
Seq C1 exon
GCAGTAGACAGCAGGGACTCCCTGGCCATGGCTCTGTATGCGTGCTGCTTTGAGTGGGTAATCAAGAAGATCAACAGCAGGATCAAAGGCAATGAGGACTTCAAGTCTATTGGCATCCTCGACATCTTTGGATTTGAAAACTTTGAG
Seq A exon
GTAGGTTTCCTAACAGTGCAGCACGTGAATTCTCTTCTGTCCATGATTAGCTGCTATTGAACAAATCTCTGTGAGCAAACTCTTTTTTTTTCTTTTTTTTTTTGAGAAGGAGTCTCACTCTGTATCCCAGGCTGGAGTGCAGTGGCGTGATCACAGCTCACTGCAACTTCCACATCCTGGTTCAAGTGATTCTCCCACCTCAGCCTCCCAAGAAGCTGAGATTACAGGTGCCTGCCACCACAGCCGGCTAATTTTTCTTGTATTTTCAATAGAGACGGGGTTGCACCATGCTGGTCAGGCTGGTCTTGGACTCCCGACCTCAGGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATAACAGGTGTGAGCCACTGTGCCAGACAACAGGCATTGATATTTTTCTCTGCAGATCTTTTCTTTGTCTTTTCTTCACCTTTCTATATAATCGTGAGTACACTAAAGATACTTATTGAATGCTTTCCCCCCTTAG
Seq C2 exon
GTTAATCACTTTGAACAGTTCAATATAAACTATGCAAACGAGAAACTTCAGGAGTACTTCAACAAGCATATTTTTTCTTTAGAACAACTAGAATATAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145555:ENST00000513610:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTAGACAGCAGGGACTCC
R:
AAAAATATGCTTGTTGAAGTACTCCT
Band lengths:
222-716
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development