HsaINT0108159 @ hg19
Intron Retention
Gene
ENSG00000145555 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:7593]
Coordinates
chr5:16763764-16764505:-
Coord C1 exon
chr5:16764359-16764505
Coord A exon
chr5:16763865-16764358
Coord C2 exon
chr5:16763764-16763864
Length
494 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
TGAATGCTTTCCCCCCTTAGGTT
3' ss Score
10.64
Exon sequences
Seq C1 exon
GCAGTAGACAGCAGGGACTCCCTGGCCATGGCTCTGTATGCGTGCTGCTTTGAGTGGGTAATCAAGAAGATCAACAGCAGGATCAAAGGCAATGAGGACTTCAAGTCTATTGGCATCCTCGACATCTTTGGATTTGAAAACTTTGAG
Seq A exon
GTAGGTTTCCTAACAGTGCAGCACGTGAATTCTCTTCTGTCCATGATTAGCTGCTATTGAACAAATCTCTGTGAGCAAACTCTTTTTTTTTCTTTTTTTTTTTGAGAAGGAGTCTCACTCTGTATCCCAGGCTGGAGTGCAGTGGCGTGATCACAGCTCACTGCAACTTCCACATCCTGGTTCAAGTGATTCTCCCACCTCAGCCTCCCAAGAAGCTGAGATTACAGGTGCCTGCCACCACAGCCGGCTAATTTTTCTTGTATTTTCAATAGAGACGGGGTTGCACCATGCTGGTCAGGCTGGTCTTGGACTCCCGACCTCAGGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATAACAGGTGTGAGCCACTGTGCCAGACAACAGGCATTGATATTTTTCTCTGCAGATCTTTTCTTTGTCTTTTCTTCACCTTTCTATATAATCGTGAGTACACTAAAGATACTTATTGAATGCTTTCCCCCCTTAG
Seq C2 exon
GTTAATCACTTTGAACAGTTCAATATAAACTATGCAAACGAGAAACTTCAGGAGTACTTCAACAAGCATATTTTTTCTTTAGAACAACTAGAATATAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145555-MYO10:NM_012334:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTAGACAGCAGGGACTCC
R:
AAAAATATGCTTGTTGAAGTACTCCT
Band lengths:
222-716
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)