BtaINT0097623 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020126 | MYO10
Description
Bos taurus myosin X (MYO10), mRNA. [Source:RefSeq mRNA;Acc:NM_174394]
Coordinates
chr20:56461029-56461427:+
Coord C1 exon
chr20:56461029-56461175
Coord A exon
chr20:56461176-56461326
Coord C2 exon
chr20:56461327-56461427
Length
151 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
3' ss Seq
TGGATTGTTTCCCCCCTTAGGTG
3' ss Score
10.09
Exon sequences
Seq C1 exon
GCGGCAGACAGCAGGGACTCCTTGGCCATGGCACTTTACGCACGCTGCTTCGAGTGGGTGATCAAGAAGATCAACAGCAGGATCAAAGGCAAAGATGACTTCAAGTCTATTGGCATCTTGGACATCTTTGGATTTGAAAACTTTGAG
Seq A exon
GTGTGCTACCAATGAGTGGGATCCTCCTAAGCAGAGCTCGTGAAACAAACACTGCTATGTTTTCTTCGCAGATTTTTGTTGGCCTTTTCTTTACCTTTTTATGTAAGAGCGAGAGTGCTAAAGACTCTTGTTGGATTGTTTCCCCCCTTAG
Seq C2 exon
GTGAATCACTTTGAGCAGTTCAATATAAACTATGCAAACGAGAAACTTCAGGAATATTTCAACAAGCATATCTTTTCTTTAGAACAACTGGAATATAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020126:ENSBTAT00000026812:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACAGCAGGGACTCCTTGG
R:
CCAGTTGTTCTAAAGAAAAGATATGC
Band lengths:
234-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]