GgaINT0096732 @ galGal4
Intron Retention
Gene
ENSGALG00000012954 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr2:75572872-75573295:+
Coord C1 exon
chr2:75572872-75573018
Coord A exon
chr2:75573019-75573194
Coord C2 exon
chr2:75573195-75573295
Length
176 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGC
5' ss Score
9.12
3' ss Seq
TAAATTTCTTCTCTTTTTAGGTG
3' ss Score
11.93
Exon sequences
Seq C1 exon
GCAATAGATAGCAGAGATTCTATGGCTATGGCACTTTATTCTCAGTGTTTTGCTTGGGTCATTAAGAAAATCAACAGCAGAATCAGAAGCAAGGAGGACTTCAAGTCCATTGGAATTCTGGACATATTTGGATTTGAAAACTTTGAG
Seq A exon
GTATGCTTCAAAAGTTTGTTCAGATGGATTGTCTGATACTGATGCTTTGTTGTTCTGTATGTGTTTGCCATCTTCACTGGAATTTGATTATTAAATGTGTTATGACTTAAATCAGTTCATCATTTGCAAGTAAAATACTTAACATATGCATTTTTTTAAATTTCTTCTCTTTTTAG
Seq C2 exon
GTGAACCGTTTTGAACAGTTCAATATTAACTATGCAAATGAAAAGCTCCAGGAGTATTTCAATAAGCACATTTTTTCTTTGGAACAACTGGAATACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954:ENSGALT00000021128:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAGCAGAGATTCTATGGCTATGGC
R:
CTGCTGTATTCCAGTTGTTCCA
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]