RnoINT0096741 @ rn6
Intron Retention
Gene
ENSRNOG00000010161 | Myo10
Description
myosin X [Source:RGD Symbol;Acc:1307193]
Coordinates
chr2:77998241-77998659:+
Coord C1 exon
chr2:77998241-77998387
Coord A exon
chr2:77998388-77998558
Coord C2 exon
chr2:77998559-77998659
Length
171 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGC
5' ss Score
9.4
3' ss Seq
TCCCTGTATCCCACCCTTAGGTT
3' ss Score
10.56
Exon sequences
Seq C1 exon
GCAGTAGATAGCAGAGACTCACTGGCCATGGCACTTTATGCTCGCTGCTTTGAGTGGGTGATCAAGAAGATCAACAGCCGGATCAAAGGCAAAGACGACTTCAAGTCCATCGGCATCCTTGACATCTTTGGATTTGAAAACTTCGAG
Seq A exon
GTACGCAGGCAGAGAGCGGGGCAGGTGCCTCCCGTTTAGAAGCTACTCTTCCACTCATTTCTTAGAGCAGTCATGGATGCTTTCCCCGCACACTTCTCTCCTGCCCCTCTTTGTTTTTTCTGTGTACTCTTAGGGGCCGTGAAGAACTTACTCCCTGTATCCCACCCTTAG
Seq C2 exon
GTTAACCACTTTGAGCAGTTCAATATCAACTATGCAAATGAGAAGCTTCAGGAATACTTCAACAAGCACATTTTTTCTTTAGAACAACTAGAATATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010161:ENSRNOT00000014022:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(11.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTAGATAGCAGAGACTCACTG
R:
ATGTGCTTGTTGAAGTATTCCTGA
Band lengths:
218-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]