DreINT0100260 @ danRer10
Intron Retention
Gene
ENSDARG00000017004 | myo10
Description
myosin X [Source:ZFIN;Acc:ZDB-GENE-070912-277]
Coordinates
chr2:42795327-42796534:-
Coord C1 exon
chr2:42796388-42796534
Coord A exon
chr2:42795428-42796387
Coord C2 exon
chr2:42795327-42795427
Length
960 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
3' ss Seq
CTGCTGGATTTCCCTCTCAGGTC
3' ss Score
8.77
Exon sequences
Seq C1 exon
GCGGTGGACTCGCGAGACTCAATGGCGATGGCTTTGTACTCTCAGTGCTTCACTTGGATCATTCGCAAACTGAACAACCGAATCAACGGCAGTGAAGACTTCAGATCCATCGGCATCCTGGACATCTTTGGCTTTGAGAACTTTGAG
Seq A exon
GTGGGAGTTAACTAGGCTTTTTACTATTGTTTTTGTGGTTGTTTTTTTTTTTGAGTTTTGTTTATAGTTTGAATTTGTATTTTGATTGGTGTAGGTCTTTAACATCTGACAAAGAGACTATCAATGAAAACTAGTCTTTGGGCTAATTTGCGTAAATTTATGTTCTTGATGAACGTTAAATAATGTACACTGTCCCTTGTTATGAAATAAATAAATTGAAAAAATTTAAACTGGTAAGATTTACAGACACCGGTTTGAATCAAGTGGTAATGTTAGTCCCAAACAATTAAAACAATTTTCAAATCTAAATTTTAGACCTTAAAAAAACTTAAATTCACTGAAATATGAAGTTGTAGGTCTTAAATATTTATAAACAGGTCTTCATTTTCTTTTATCCATATAAAGCTCCCCAATACAACCAACAATCCATCTAATACATCTTAATACATTTGGCAAAAGTAGAAGTTATTAATCCTATTTACCAATATGGTTTTATTATCTTCCAATAATCAATTTAGTGTATTATAGTTTTTAAAGCTTGCCTTTTTTTTGAAAGAAAAAATTATGTTAATAAAAAAATAAAATATATACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGTGTATATGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTATAATTAGTTTTCTTGTTTCAATACATTATTTAAAATATGTGGCCTATAAATAACTGAATTAAAATTCCAATGGGGCAAGTAAAAAAAATTACACTGGCCATTACTAAAAAAAGTCTGAAATTTTATTTACAGAGGTCTTTAAAAAGTCTTAAGTCTTGGTGAAACCTGTAGAAACCCAGTAACCCACTCGTTCTGCTGGATTTCCCTCTCAG
Seq C2 exon
GTCAACCGCTTTGAGCAGTTCAACATTAACTATGCAAACGAGAAGCTTCAGGAGTATTTCAACAAGCACATTTTCTCACTGGAGCAGCTTGAGTACAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017004:ENSDART00000140159:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGACTCGCGAGACTCAAT
R:
TTGTTGTACTCAAGCTGCTCCA
Band lengths:
246-1206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]