GgaINT0046938 @ galGal3
Intron Retention
Gene
ENSGALG00000011009 | F1NN72_CHICK
Description
NA
Coordinates
chr7:21347962-21351284:-
Coord C1 exon
chr7:21351018-21351284
Coord A exon
chr7:21348073-21351017
Coord C2 exon
chr7:21347962-21348072
Length
2945 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TTCTGTGTTTCTTTTTCCAGACC
3' ss Score
11.5
Exon sequences
Seq C1 exon
ATGGCACAGTCAGTGCTGGTACCACCAGGACCTGACAGCTTCCGCTATTTCACAAGAGAATCACTTGCAGCTATTGAACAACGTATCAATGAAGAAAAAGCTAAAAAATCCAAACAAGAACGAAAAGACGACGATGATGAAGATGGCCCAAAGCCAAACAGTGACTTGGAGGCAGGAAAGACCCTGCCATTTATTTATGGCGACATACCTCCAGGAATGGTATCTGAGCCCTTGGAAGACCTGGACCCATATTATATCAATAAAAAA
Seq A exon
GTGAGTGTATTGTATCTTTCCATGAAACTTTAAGATTAAAATGCAGCAGACTCTCTTGGCAGGCTTAGCATTTCCACTGTTTTGGATCAAGTCTTTGCTTACCATTATATTCTGATTTCTTTCATTGGTAGAAATCTGAATTGTAAGAACAGAAGTTAGAAATGCATGTCTGTGGAATCCAGTCTGTAGGTAGAAGTGAATTCAGGTTTATTTTAATATACTTGGCATTTTATTAAAATCCGTAGCTTTCAGTGTTTTATTCACAGGAAAACTATTGAAAAGACAGCACAAGGGCTATCTTCAGCATGCTATTAGATCATTAATTGTTCAATATACATGTGAAAGGAACTGATCATTTTGGAGTCCATCTCAAAGGCAGCCAGACACCTCCTCCCTGACTTTCATCACTGTCACCTGGGAGGCTTAGGCTGCATTCTCTTGTTGCTAGGAAGGATATGGAAGTATGGAAAAGTAATTTATCAGGATATGTTGAAGGTCTTTCATTTTCATTCAGTCTATAGAGTGAACTTGGAACTTAGATGCTCTGGGTGAAAAATTTTTCATATCCGGATTTATATTCCTCATTGATTGTTATCACAAAGGAGGTGTTTAACAGAGGCAAATAAATAAAGAGAAGGGAGGATTTCCTTTTGGAGTGTCCAAAAAATTTTAGATAATTTTAAAGATACTTTATAGATGTGTTCTTTTTTTTTTTTTTTTTTTTTAAGTAGAAATACAAAAATAAGAGCACACACAATAAAACCCAGCAACAACTGTGAGGACAAACACAGTAGTGCTAAACTTTAGACTCTTATCCAGGTGGCTTTGGGTTACCCCCAGAATTCCATTCCTTCAGGTTTTGGCATAATACTTACTGTATTATTTTTATACTATCAGTAAACATGGAAGAATTTATAGGAAAAAAACTTCAGTTAAGCAAAAGATAATAATAATTTAAATATTTTTGCTACAAGAATTAAGGATATGCTAAACAGGAACAACAGCTTTAAAATAAATCAGCTCTACCTTAAATGTTCATTGCAGAATTTCCAAAACTCAATTCATTTGTGGAGAATTGTGACTTAGATTTGAAAATTAGGTTTCCAATTAAATACTTCTTTCCTCTTGGTTTACTCTAATGGGTAATCCTGTGGAAGATCAGAAGTTAGGCAAAAGAAATCAGTCCAAGTGCTGATTCCTTTCCTTCCTCTTTTCCCAGTTCCACAGTAATAAACATCTAAATTTGGTGCTGGAGATCTTTAAGTTATCATTATCATGGTTTGGAAACCAGAAAAGTAATTCTGGAATTCTCTGTGCAAATGAAGTACACTCCTGAATTCCTTGTCCCTGAATTAGCCATACATAGCAGTTGTCTTGTTCTTTTATGAAACCATAGTTTCTAGGTTTCTAGCTCAAGATGTGAGACTCCAAAATACATGTTTTGCAATCATAATTTCTTCTGATATTTTTCTTGGAGTTCTTTGCATATTTTTGAACATTCTTACTTGCGTATTTAGGTCAGATTGCATTTTAATTTTTCAATGTGTCTTGATAGGCCAGCATTGCTCAAATGATGTATCGTCAAATGTTGTGTCAGAGCAAAGGAAACTGAAGACGTGTGAAAAACTGATTTTGAAACAGAGTTTCTAAAACTCAGAGGAGAATATTAAGAGAGTAGAAAAGCAGTGGTAGAAAAGATACCACTTTAGAAACTAATTCTCCCTCCTTTACAAATAAGAACCTAAGTATGGTCTGAGAATCAACATGTGTCTGTGTATCTGAACATATGTTTCATTGGGAAGAGCTGAAGTTTATGATTCCAAGCAGGAGGAGAACTTGTGTTTCCAGGATTTCATCTGCTTCACTTGGCACACCTTCTCAGAAAGTATAGTCTTTGAAAACACTGCCCTCTGATTCCAGCTGAGATAGGTGATAGCTCCTGGCAGTGCTCCAGTTTTTAATGGGTTATGTCCCTTTGGGCTTTTTAGAGCTGTCACAATATTAGGTAGATCCGCATACCTTCAGTGAGAGTAAACTTTCACCCTTGTTTGGAAAGAAAATAAAATAGATAGGAATTTACCCAAATGCATAGATATCTAAATAATTTTTAAAAGCACTGCATGTTAAATAAAGGCTTTATACTTCTTTATTTCCCAGGTTTTAAGAAAACTGTTACATTTTTATACATATATATGTATGTATATATATGTATGTATATATATGTTAATGCTGGCAGTATACATGAATCATTGCTGAAACCATGGAGAGACAGTGAAAGTATATAGATTATTGAATCTTTATGAGGTAAAAGTAAAGCAGTGTAAGAAAAGTAGATAGAGTTGCAGGTATGAAACTCTCACAAGAAATAGTTAAAGGGAGAAGCAATACGTTTATCATTTCTTGAATTACAGTGAAAACTATCCACCATATTTATGTTATGACCAAAAACTGGTTATTGAACACTACATTTCCTTTTTGCTATTTCACTTTTGAAAACCACATCACTCCATAGTACTATTGTCTTAGTACTTTGATGGTGTGATAATTAATTCTGGTTATTTGATTAAGGAAATGCTGATGTTTTCATGAGTCTTTTTTTTTATGTTACATGCACCAGTAGATATATTATAAGCTATAGAATTAGTGCCTCAATGTACCTGTCTTTGTTTTCTAGCTAGCAATCTCAGGATTGCTTATGATTTCTAAATGAATTCTTATAGCATTTTAATGAAATTCTATTGATAGTAGTTTGTCTAGAATCTGCTGTATGTGAACTAGACAAGGGGATTCTGATTCTGAGATGGGCAAAGGGGGAGGTGCAAATAGAAGAGTTTGACCAAATATGATTAATGATGGAATGAACATGATTCAGGGTTTGACCTTGTGAACTGTAACTTGTTGGTATCTTTTAAATGTAATTTTTAATTCTGTGTTTCTTTTTCCAG
Seq C2 exon
ACCTTCATAGTATTGAATAAAGGGAAGGCAATATTCCGATTCAGTGCCACCTCTGCCCTGTACATGTTAACTCCTTTCAATCCTCTTAGAAAAATAGCTATTAAAATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011009:ENSGALT00000017933:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.348 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]