GgaINT0046938 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GG79]
Coordinates
chr7:19368406-19371849:-
Coord C1 exon
chr7:19371530-19371849
Coord A exon
chr7:19368586-19371529
Coord C2 exon
chr7:19368406-19368585
Length
2944 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TTCTGTGTTTCTTTTTCCAGACC
3' ss Score
11.5
Exon sequences
Seq C1 exon
CACTTTTTTTATGAGGGAGGCTAAACAGTAATTAAGAGGTGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCACCAGGACCTGACAGCTTCCGCTATTTCACAAGAGAATCACTTGCAGCTATTGAACAACGTATCAATGAAGAAAAAGCTAAAAAATCCAAACAAGAACGAAAAGACGACGATGATGAAGATGGCCCAAAGCCAAACAGTGACTTGGAGGCAGGAAAGACCCTGCCATTTATTTATGGCGACATACCTCCAGGAATGGTATCTGAGCCCTTGGAAGACCTGGACCCATATTATATCAATAAAAAA
Seq A exon
GTGAGTGTATTGTATCTTTCCATGAAACTTTAAGATTAAAATGCAGCAGACTCTCTTGGCAGGCTTAGCATTTCCACTGTTTTGGATCAAGTCTTTGCTTACCATTATATTCTGATTTCTTTCATTGGTAGAAATCTGAATTGTAAGAACAGAAGTTAGAAATGCATGTCTGTGGAATCCAGTCTGTAGGTAGAAGTGAATTCAGGTTTATTTTAATATACTTGGCATTTTATTAAAATCCGTAGCTTTCAGTGTTTTATTCACAGGAAAACTATTGAAAAGACAGCACAAGGGCTATCTTCAGCATGCTATTAGATCATTAATTGTTCAATATACATGTGAAAGGAACTGATCATTTTGGAGTCCATCTCAAAGGCAGCCAGACACCTCCTCCCTGACTTTCATCACTGTCACCTGGGAGGCTTAGGCTGCATTCTCTTGTTGCTAGGAAGGATATGGAAGTATGGAAAAGTAATTTATCAGGATATGTTGAAGGTCTTTCATTTTCATTCAGTCTATAGAGTGAACTTGGAACTTAGATGCTCTGGGTGAAAAATTTTTCATATCCGGATTTATATTCCTCATTGATTGTTATCACAAAGGAGGTGTTTAACAGAGGCAAATAAATAAAGAGAAGGGAGGATTTCCTTTTGGAGTGTCCAAAAAATTTTAGATAATTTTAAAGATACTTTATAGATGTGTTCTTTTTTTTTTTTTTTTTTTTAAGTAGAAATACAAAAATAAGAGCACACACAATAAAACCCAGCAACAACTGTGAGGACAAACACAGTAGTGCTAAACTTTAGACTCTTATCCAGGTGGCTTTGGGTTACCCCCAGAATTCCATTCCTTCAGGTTTTGGCATAATACTTACTGTATTATTTTTATACTATCAGTAAACATGGAAGAATTTATAGGAAAAAAACTTCAGTTAAGCAAAAGATAATAATAATTTAAATATTTTTGCTACAAGAATTAAGGATATGCTAAACAGGAACAACAGCTTTAAAATAAATCAGCTCTACCTTAAATGTTCATTGCAGAATTTCCAAAACTCAATTCATTTGTGGAGAATTGTGACTTAGATTTGAAAATTAGGTTTCCAATTAAATACTTCTTTCCTCTTGGTTTACTCTAATGGGTAATCCTGTGGAAGATCAGAAGTTAGGCAAAAGAAATCAGTCCAAGTGCTGATTCCTTTCCTTCCTCTTTTCCCAGTTCCACAGTAATAAACATCTAAATTTGGTGCTGGAGATCTTTAAGTTATCATTATCATGGTTTGGAAACCAGAAAAGTAATTCTGGAATTCTCTGTGCAAATGAAGTACACTCCTGAATTCCTTGTCCCTGAATTAGCCATACATAGCAGTTGTCTTGTTCTTTTATGAAACCATAGTTTCTAGGTTTCTAGCTCAAGATGTGAGACTCCAAAATACATGTTTTGCAATCATAATTTCTTCTGATATTTTTCTTGGAGTTCTTTGCATATTTTTGAACATTCTTACTTGCGTATTTAGGTCAGATTGCATTTTAATTTTTCAATGTGTCTTGATAGGCCAGCATTGCTCAAATGATGTATCGTCAAATGTTGTGTCAGAGCAAAGGAAACTGAAGACGTGTGAAAAACTGATTTTGAAACAGAGTTTCTAAAACTCAGAGGAGAATATTAAGAGAGTAGAAAAGCAGTGGTAGAAAAGATACCACTTTAGAAACTAATTCTCCCTCCTTTACAAATAAGAACCTAAGTATGGTCTGAGAATCAACATGTGTCTGTGTATCTGAACATATGTTTCATTGGGAAGAGCTGAAGTTTATGATTCCAAGCAGGAGGAGAACTTGTGTTTCCAGGATTTCATCTGCTTCACTTGGCACACCTTCTCAGAAAGTATAGTCTTTGAAAACACTGCCCTCTGATTCCAGCTGAGATAGGTGATAGCTCCTGGCAGTGCTCCAGTTTTTAATGGGTTATGTCCCTTTGGGCTTTTTAGAGCTGTCACAATATTAGGTAGATCCGCATACCTTCAGTGAGAGTAAACTTTCACCCTTGTTTGGAAAGAAAATAAAATAGATAGGAATTTACCCAAATGCATAGATATCTAAATAATTTTTAAAAGCACTGCATGTTAAATAAAGGCTTTATACTTCTTTATTTCCCAGGTTTTAAGAAAACTGTTACATTTTTATACATATATATGTATGTATATATATGTATGTATATATATGTTAATGCTGGCAGTATACATGAATCATTGCTGAAACCATGGAGAGACAGTGAAAGTATATAGATTATTGAATCTTTATGAGGTAAAAGTAAAGCAGTGTAAGAAAAGTAGATAGAGTTGCAGGTATGAAACTCTCACAAGAAATAGTTAAAGGGAGAAGCAATACGTTTATCATTTCTTGAATTACAGTGAAAACTATCCACCATATTTATGTTATGACCAAAAACTGGTTATTGAACACTACATTTCCTTTTTGCTATTTCACTTTTGAAAACCACATCACTCCATAGTACTATTGTCTTAGTACTTTGATGGTGTGATAATTAATTCTGGTTATTTGATTAAGGAAATGCTGATGTTTTCATGAGTCTTTTTTTTTATGTTACATGCACCAGTAGATATATTATAAGCTATAGAATTAGTGCCTCAATGTACCTGTCTTTGTTTTCTAGCTAGCAATCTCAGGATTGCTTATGATTTCTAAATGAATTCTTATAGCATTTTAATGAAATTCTATTGATAGTAGTTTGTCTAGAATCTGCTGTATGTGAACTAGACAAGGGGATTCTGATTCTGAGATGGGCAAAGGGGGAGGTGCAAATAGAAGAGTTTGACCAAATATGATTAATGATGGAATGAACATGATTCAGGGTTTGACCTTGTGAACTGTAACTTGTTGGTATCTTTTAAATGTAATTTTTAATTCTGTGTTTCTTTTTCCAG
Seq C2 exon
ACCTTCATAGTATTGAATAAAGGGAAGGCAATATTCCGATTCAGTGCCACCTCTGCCCTGTACATGTTAACTCCTTTCAATCCTCTTAGAAAAATAGCTATTAAAATTTTGGTACATTCATATCCTTTTCAAGTGGTCAGTATAAAGCTGTAGTCAATGAGATGTTGCTTAGTATCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026006:ENSGALT00000044273:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.348 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]