GgaINT0047601 @ galGal3
Intron Retention
Gene
ENSGALG00000012547 | F1NC97_CHICK
Description
NA
Coordinates
chr7:37875080-37880663:-
Coord C1 exon
chr7:37880433-37880663
Coord A exon
chr7:37875326-37880432
Coord C2 exon
chr7:37875080-37875325
Length
5107 bp
Sequences
Splice sites
5' ss Seq
TAGGTACGT
5' ss Score
8.17
3' ss Seq
TCCCTTGTCTCTCCCCAAAGCCT
3' ss Score
8.76
Exon sequences
Seq C1 exon
GGCTCCAGTGCGTGTGCCAGCTGTGCGAGCACACCAACTTCACCTGCCAGACGGAGGGAGCGTGCTGGGCCTCGGTCATGCTAACCAACGGCAAGGAGGAGGTGATCAAATCCTGCGTGTCCCTCCCGGAGCTCAACGCCCAGGTCTTCTGCCACAGCTCCAAGAACATCACCAAGACTGAGTGCTGCTACACCGACATCTGCAACAACATCACCCTCCGCCTGCCCATAG
Seq A exon
GTACGTGGTGCAGCACTCGGGTGCCTGTGTTGGTGTGGGCAGAGCGTGGCTGGGCGGTGCTCTGGGGGCTGGCAGCAGAACTGAAGCTGTAGGGGGGGGTGGTGGGTATGGTTGTCATTGCTGGGGGGAGTCCTCGTGTCTCAGCAAGCAGGTAGGTTTCCCTTTAGATTTTGGCTTGTGCGGTGCAGGGAGCAGCCCATGGGGCAGCCTGGTTCAGAGCTCGGTGTCAGCGATCCCTGCTCAGCAGACACGGGGTGTGAATGAAATTCCTGCCTCCAGGGGATGGAGGAGCTGAGTGCACCGCACGGTGCTGGAGCCTGCCGTGCTCACAGCTGGGCGATGGAGTTGGTTTGGTCCTTTAAAAATGTGCATCCGCACTGGTTTTAGATTTAATTATTGGTAAAACACTTCAACCTTCTCTCCAGGATTTGTGTCTAATTCAAGCTTTATAATAAGCTGTCAAATACTCGACTTTATCAGATGACACCTTTTATGTACTTAGAGCAGTGAGAGAGCTTACAGGTAAGAAAGATGTGGATTAATGCGTAATTTACAGTTACAAGTTGCGCTCAAGCTGCTATCGTTAGCAGCATTGTGAGAGCACTCTGTTAATACTTAGCAGGATGAAATGCTCCCATAACACTGTTTGATACGTGAGCTACAGGCAGGTGACCACAGGGAAAGGGTGGGAGGAGTGCTGTGAATCTCATCCATGGGGATGAGCTGTGCCTGCTGCTCATGGCTAAGGGCTGTTCGGGTGCGCATCTTCCAGCTGACAACAGAAGGGAGGTGCCAGTGGTAGCTGAGCTCCAGAAATGCAGAAACATAGAATGCTTAGAGTTGGAAGGGACCTCTGAGGGCCATCGAGTCCAACTCCCCTGCAGTGCGCAGGGATACCACAGCTAGATCAGGTTGCTCAGGGCCTGATCCAGCCTCACCTTGAAAGTTTCCATGGATGGGGCATCCACCGTATCACTGGGCAGCCTGTTTCAGTGCCTCACCACCCTCACTATAAAAGACTTTTTCCTTATATCCAACCTAAATCTCCCCTCCCTGAGAAGCCATTTCCTCTTGTTCTATCACCACAGGCCCTGCTAAGGCATCTGTCCCCTTTCCTGTCTCTCCCCTTTAGATACGGACAGGTCACCTCGCAGCCTTCTCTTCTCCATCTGCACAGCCCCAGCTCCCAGCTTGTCCTCATGGGAGAGCTGTTCCATCCTGTGGATAATGACACTCCATTATATTTACCTGCTTGAAAATGCCTCAAGACACCGAAGCCTTTATTTCCATTCATTCTATTCACCTCAGTGTTAGTATTCCAGAAGTTGGACACTGCTGTACGAGAGCTTTTACCAGTTTCACACTATAAAATGTGAACCTTATAAAACTGGCATTAATTGTCTGTTATTGAGCAGGATGACAGCACTTCACCTTGCTTTCCCAGCACTAACTTGGTCAAGAACAGTCAGGAGGAAGCTGCACATAGTGAGTGAAGAGGCTTTCCAGTAACTTCCCAGAATGCACTGACGGATGAGAGCAGGGAGGGGGGAGGATGGAGCAAAAAGAGAAGGGGCTGGGAAATATATTGGTATATTTTTCTCCCTTCTGCGTGGCCACTTTGGTTCCTCTGAGTGGATGAGTTTGGGAGCCAATGCTGGATGGAGCACAGTGCTGACAGTGTGTGTTACCGCGGGTTGTGCTGCGCTGCAGCAACTTCGTCCAGTTGGCCGCTTTCCGCTTTGGTTTCTGATGAGCGCATTTTGGTCTGAGGCAGCCTGGCCATCAGGAAGGGGTCAGGACTGGAAAAAGCAGGGGGAGGAGGAGCTGCTGTGCCCAGCTTCCACCCTCACCCACTGCCCTCAGCCTGAACTCGTTTCCTCCTCTCTCCCATGCAGTCGGTGCTGTACCACTGCCGCAGCCCTCGGGATGATCTCCTCGGGACGATCGCCCTGAGAAGCCCTGCAGGCGGTGCTGCAGCCCTCGCGGCCGCTCTGTGCCGCCCCGCACTGCGCTGCTCCCCGCACACACCTCGCCTGTCCCACATCCGTGTCCTCTGCAGGGATTTGTAAGAACACAGCCCTTGGAAGGGAAGGTGGGGGCAGGGAAACAGCAATTTAGATGATGCGTCTGTTTATCTCACAGCTGTATCCCTGATGGCTTTCCTTGAACCTCGGCACCCTTCAGCAGCCCTTTCCCAGCTGTTTTCTGGACGTCCCGAAAGTGTGCAGCCATGGAACTCTGCACTCAATGCAGTGTGTTTCCTTACACATTGGAAAGAACGGTGGTTTGTTTGTTTGTTTTTCCACCTCTGAATAATTTGGTAACTTAAATGTGAATAGTTTTGTGCTTGGAGAAGCCTTAAGGTGGCACGTCAGAAGCCAGGCAGGCGCTGTGTGTGAGGATGTCCTTTCCATGGGAGGGAAGGGAACCATCCTTCTTTCTTCCTGCCCAGAAGCGCTCCTATTTACACCGCTTGGAGGAGAGCTGCACCACATTGTGAAACCGCTGGGGATTGCCAGATGTTCTATTTTTGTTTCATACATGACAGCACATCTGCAGGGCCTATTCTTGATCAGTAAGTCAATAATACATTAGAAATAAGATTGCAACATGCTGTGATTAATGGTGTTGATTTTAGTGCTTTAGGTGGCCATGAGAGATTTTCTTATTTCCCAAAGAGTTGAGCGTTGCACAATTCTGTAAACATTGCCACACTTATTTGGTGATTTGGTCCTAAGCTGCTGTTTGTATGGCGTGTGCTGTGTGTTTTGCACTGGCACTGTTTGTCCCTCCCCGGGATGCGGTGTTGCTGGGGCAGCCCCAGGGGTGCCGGCTGTGAGCCCAGGGGTGGGGATGTGCCTGCAGGAGCTGCACTGTGGGGTCAGCGCTGGGGGGTGCAGCAGAAACTGCAGTGCTGGTAATTCCTGAGTCTCCTATGTGTGCTCTGTGCGGGCCTGGCCAGGACTGGAGTGGTTGCCACCATCCCCGATCCCCGCTTTGTCTTCCCTACCTGTGCTAGGTGGTGACTGCCATGGGCTCCAGCTGCTCCTCCCAGCAGGCTTCCCTGGGCAGGGGGCCTCTTTGTCCCGCAGGAGCTCAGTGCAGACCCCAAGCTGTCTGGGGCACCCCACGCTCCCATCCCTCCCCTTCTGTGCCTGAGCTCCTCGACCTGCAGCAGCATCTCAGAGCAGACCTGTAAGTGTTGCTGAAGTCCATTTCGTTCCAAACAGCTGCTGCTGCTTAGGTCATGGCGTTGGTGTCTGTTTGCATCCTGGGTGCTGGATGTCAGCCTCGTGAGTGGATGTGTCTGAATCTTGCTTCTGCCTTGCGGACGTCTCACTGAGCCCCCAGAATGGCCACGTGTGTTTGTGCCTGAGTCCTCCTGTGTCCTTGAGAGAGGAGAAGTGCCAGGAGAGGGATGTGTGGCAGCAGTGGATGTATGCAGTGGTGCAAAGTGACAGAGGTGAGAGGATAGAGGACAACGGCTGGTGAAGTAAAGCCCCGTTCTGGCAGCAGCAGCTGTGTGCGTGTGGTGGGGACATGGATGGAGCAGCGGACGCAGAGCGCCCTGCCAGCTGTGCTGCTCAGCCCGTGCAGCCTGCCATGTGCATCCCAGCAGCACAGCTATGCAGCCTGCCATGTGCATCCCAACAGCACGGCTGTGCAGTCTGCCATGTGCATCCCAGCAGCACGGCTGTGCAGTCTGCCATGTGCACGGCACCCACGCATGGTGGTGCTCAGAGAGCAGAGCAGCTGGGGCAGATACTTTGCAGTAGCACTGTTTGCACGGCTTCCAGCAGATCAGTGGCATTGCCCCCTGGGCTGTGGGAGCTTTGGGGTGTGCATGGCAGGCTCCAGAGGCTGCGGATGGAAGGACCCCCTGCTGCATGTAACTGCCCGCTCGGTGCACTTCACGCCTTCCTGAGCGTTTTCCTTTGGGTCGGTTTGCAGCGCCTTAAGGACGAGCAAGTTTTACGTTTTGAGAGTTTTGTGCTCTGCTGTTTTTCAGCAGTTGGTGGAAGGAACTGATCCTTTAAAGGGTCTTTCTTGTACGTGTTTGTTTACCAGCCCCCGCCACTAGGAAGCGCCCGCGCCTGCACAGCCTCCCGAGCAGTACTGAAGGAAAAGCTGCTGGGCAAGAAGGGGCGACTTCTGTTTTCAGAGCGGTTTGAACTGCACGCTGTGAGCAGACGCAGACCTCTGTTGTTAACACCATGTTTCCTTTTTCTCTCTTGGTCGAAGCTGGGCAGAAGGAAGAAGGCAGCTCTGCACAGCTGCTCACAGCCCGGCACCTCTGTGCTGCCGAGGGCACATCTTGGCACTGTGCTCTGCTCTGGGAGAAACTGCTGCTGGTGTCGCTGCACCCGGAGGAACGTAACCTTCAGTGCTGGGCTGGGGAGCTCCGCTGCCTTCCTCCTCCTCCTCCACAGCACAGAGCAATGCTGGGGCTGTGTAGCGCATAGAACTGCTGCGTGCACACTGCTGAGTGCTCTCTGGAGGGAGAGAGGCTCTTGGTGTTGTGTAGCTGCTCCAGGGCTGACTCTGTGGGGTGTGAGGTGCACGGTTCCCCAGTCTTTGATAGCGTGTGGGTCCTCTGTGGGGTACTTTTGCTGCAGTGTGCTTTGATTCTGAGTGGTTGTTTGTTTATTTGTTTATTTATTTAGATTATTCACAACTCCTTGGGCCTTAGGAGCCTGTGTGGGTGTGCAGGCCCCCAGTCATTTGTTCCTGCAGCCTCTTGCTGTGTGCTTTTCCCATATCATTTTAAAGCAGAAGGTGGTGTGGGGCAGTCCCATTACCTGACCCTTGTAAAATACAGCCTTGTGAGCACAAGTTTTGAAAGCGTTCTGCCTTAAGAACCCTGTTATTGCCTCATTGGCTGGATCTTTGCGTGTCCCACACCCATTAGGTGTTAGGGACGCAGCTTCTCCAAGGCTCTCTGTGTTTGGCTGGGCTGGTGCTGAGAAATCCATGCACAAACCCAAAGGAGCAGGCAGGGCCCTGTGCCCGTGGGCTGTGAGCCGTTGGGTCACAGCACGGCTCAGCCCGCAGCAGTCCCTTGCTGACCGCCTGTTTCTCCCACCTCTTCCCTTGTCTCTCCCCAAAG
Seq C2 exon
CCTCCGAGTCCCCCAGCCGTGCTGCCGTGGGTCCCGTGGTGCTGGCAGTGACAGTGGCCGTGCCCATCTGCGTTCTGTCCCTCGTGGCAGTGCTGGCTGCCTGCATCTGCCAGGGCCGGCGCTGCGCCCGCGGCAGGACGAAGCCGCCCAACGTGGAGGAGCCGCTCTCCGAGTGCAACCTGGTCAGCTCGGGCAAGACGCTCAAGGACCTCATTTATGACATGACGACGTCTGGCTCTGGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012547:ENSGALT00000020491:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.012
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=96.2)
A:
NA
C2:
PF085157=TGF_beta_GS=PU(58.6=20.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]