GgaINT0047678 @ galGal3
Intron Retention
Gene
ENSGALG00000010943 | E1C4S3_CHICK
Description
NA
Coordinates
chr7:21117185-21123312:+
Coord C1 exon
chr7:21117185-21117466
Coord A exon
chr7:21117467-21123258
Coord C2 exon
chr7:21123259-21123312
Length
5792 bp
Sequences
Splice sites
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
3' ss Seq
TAGGTGTGTACTGTTTACAGGCT
3' ss Score
4.69
Exon sequences
Seq C1 exon
GTGGTTGTGAATGCCCTTTTAGGAGCAATTCCATCCATCATGAACGTGCTTCTCGTTTGTCTTATATTCTGGCTAATTTTCAGCATCATGGGAGTAAATCTGTTTGCTGGGAAGTTCTACTACTGTGTTAACACCACAACTGATGAAAGGTTTGAAGTCGACCAAATCAACAATTTTAGTCAGTGCGAGGAACTCATAAAAAACAATCAAAGTGCCCGATGGAAAAACGTGAAAGTAAACTTTGATAATGTAGGATTTGGGTATCTTTCTTTGCTTCAAGTA
Seq A exon
GTAAGTGATCACTCTTTATTATATCGCTCTTATTGTTTTTATGTAATAGTGAAAAGCAATTCTAGCAACAAAAGCAGAATACATATTTTTATCTGTGACTTAGTAATTTAATAATACCACTGCACTGATGATTTATTAGTCTTTCATACTGCTCAGCAAAGTCTACTAAGAAGAAAGAAGAACTTTTAGGACATCTGAGGACATCTGAGGGAACAATTGTTCCCTTTCTAACTCTGAATGTTTCTAGAAGTAATAGGGCTGGTATATAGTTATCTGAAGAGAAATCTGCATTAGTGTAATTAAGTCACAGAAAAGAATTCCGGGTAGAAAACGCTGTCTTAGTGATGTGGCTGCCACCACTGCAGTTACAAGATCTGAGAAACAATTTCCATCTAGAGGAGAAATAGAGGAAAAGTAACATTAGGTGCTATAGCCTATGAAATATTTTCCCTGCTATTCTTGTGCACAGGCACCCAAAGAAAATATATGCAGAAAGGCTTATGTCTTCACTATCAAAAATTATGTTGTCAGAACATGAACTATCCCTGTGTACATTGGAATACCTTACAGTCTGACCCAGCCAAGAAATTGCAGGACTCTAACCTGAATTGTGCACCATGAGCAACCTGTCTATTTGAGGTCTAATTCTGAGAATTAATTTTCATTTTTAGTGTTTTAAAATAAGTTTCTAACTCTTATATTGGCATAAGAAATCTTACTGATGCAGATTGTTAACATGATGCAGTGGCATTAACATGGGCCTGCCTAGGTTCTAAGACAATAAATCTGAGCACTGGTAACTGCCTCTCTGATAGAACAGAGCATCTCGTTGCATGACTCTGAAAACACTGATGATTTGAAATTCATTATGATTAATTATTTACTGTCATATCAAGAAGAGCAGAGAGGGACCAGCAGAATTTAAGAAATATACAAAGGAATGCAGTTTGACTTTGATAACAAAATTGGACTACAGTGGAAAGACCATGAATATTGTTTTCTCTGTCTGATTTTTGAAATCCATTGACCTAGAATCTCCACTGTAGAGGGAGGGTCAGTATGCTTTATAAAACATGTTCTGCTTAAAAGGATGTCAGCAAAATTCCTTTCAAGTGGTTTGCATCTCTTCTTTCAGTAGCAGCTTAGACTATTCTGGGACAGGTATAAGATAAGGTACATCTTTTTTTGGCCTTATGGGCCCCGTCAGCACCTTCCACTACTTCATAATGTCGTATCTATTCCAGTGTCTCAGCTATGCATAGCTTACTTCATTTCCACTAAAAAGCGGAGAATATTTTTTCTTCAGAAAAATATATTTCTTACATGAGCATTTAGATTCTTGGATTATTGCATTGCTCTGGGAGGCAAGGGCAAGTTGGGTGAAATTTCCAATTGTACCCACACTTCTAAAGGAAAAAAACAAAGAGGGACCTAGCTCTCATGAGAGGACAAGACAGTTGTTTTTAAAATATCTGCAACACAGAAATTCTGCATAGATATGAAATACTTGTTGTGTTGATGGAGTTTTTGTGTGAGTAGAATTTCAGAGGCATCACCATATATTTTAACTTTCTTTGTACTACTAAGATGCATGTAGGTGTGTGAAATGATTTTTTGTTCAACATTCCAGAAAAAAAAAAAGATACAAAAACAATTAAAAAGACACTTTTGTTATCCCATGAAACAAACACTTGAAACTGCATCTTTTAGGGTTTGATAGGAAAGCTACTAGTAGTGATTCTGCATGTATGGAATGATACGTGCCCTAGACTAAAGAAAGCAAATATCAGCTTGATTTTCAGGTAATGCTTTAAATGCAAAGAATCTGTGGGATTTTTTCACTCTTAAGAACGGAATGAAGGCCATAATTCATAAACGTTTATCAAGAAGATGTTTATAAGGTGATTCTCACTTCAGTATTTAAAGTACTTTGGATGAGGAACTAGTAAAGGATTCTAAGGCTGTTGTGTTTAGAAGAAACATGAGAAGTAGATGGGTATGTCTTGATTTACATACGCTTCCTAATCAGCTAGTATTAACAGTAAAAATGAGTAAATGTTAAGAATTACTTAAAAGCATCTGTGAATATGTCAGAAACAATGATAAAGCTATTTGTTCAAAAGCCCCAAAATATCTGATAAAATCATAGCTGCTATTGGAAAAGCTTTCTATGCACCCAGTGTGAACATTAATGACTGTTTTTTTTACATGGTTAATTGAAAAGTCTACTGAAGTCATTTATTTCTCCCCTCTAACAGTCTCAAGTACAGACTTGTTTAGGTTGTGGTGGACCCAAGAAAACAACCTCATAGAGGTGAATATCATTGTTCTAATGATAAGTTCAGTGATAAGTGTCAATGGATGAATTACAGATAGAAGATTCTACTGCAGGAGGTTAGAAGCTACAGAAAGCTTACAATCCAGTATTTTTTCCATTATTCATCCTGTCCTCTGACTCATACTTTGTAAGCCAGTCAAAGAAGAGTAATGCAAATTTGCTCAGCTTTTCTGGATTATAGATAATACAATAGAAGCCTTTATTCTCTTTATCAATAAGGTATTCTATCTTGAGTGAATACTATGGGAAATATTGTTTTAATGCAAATTATACATATATGTATGTATAATATATATATAAAACATTATTATGTTATTATAACATATAACAATATTTTATATATATATAACAAACAAGAACAAACCAAAACTCCAAGCCCTAGTGCAGAAAAACTTCAGATTTTTTTTTTTTTTTTGTATAAATTTGAGTATTTTTCTGATCCTGGAGAAAATCATCAGAGCAGAGACAGATCTGCTGAAGAAATTCCTTTCACAACTTTCACACTTCAGTAAGTGAAGAGGAACAGGCTGATGTACACAAAGAGATGTGGCATCTATCTGCCTTGAAAATTTTACGTTATTATTTCTTTTTAACATAAATCCAGTGTTTGGATTCTTTGGTAAGTAGATCTCCTGAAGACCTGCTTTTATCCAGGATAAAACATGGCAAATTAGTCTCGGAACACAGTATCACATTCTTCTGTTATTTTTGGTAAAGAAATATAGTAGTACCACTCCGGCTGTATTTCTGACTTCATTGGAAATTGTCCATCATGAGAAGAAGTTTATGTACTTCTAACAATAGTAGCCTGAGAGAATTTTGTTTTGTTGTTTTCTAGCTACTTTTGAATCTACATTTGAATTTGTCTTTCAAATTTCTTTGGGGGAAGCATTTAGAATAAGTTTAATGTTTGAAATCAGTGAATTACTTCTGATTTAGTGTCACTGAAGATATACAATGTATTTGTATATATACAAAAAGGAAACAGATTTTTATCTCTTTGTCATATTTGTGTGTTTTTTAGTAAGCATGCACAAATGCCCAAATAATACCTTATTTCTGTTGAAGAAGATCTGTTGCAGAAAAATTTGAGCCTAGCAAAACCGGGCCTAAGCTTCTACTGATTGATTGCATTAGGAACAACACTCAGTAAATTTGGTGCTTTGATACTGAATCTCTGGTTTAATTATATGATATTGCTCAGGCAACGTGTTTAGAAAATAGAAATTCTCCTACTGAACTGAGGCTCCTGCCTTGGGAATTACAGAATCTTTTTTTTTTTTCACACTCTTTTCATGTTGACTAATAATGATAATAATATAAAAGTTGTGATAGTTCTTCCTATCTTCTTCCTAGCTTTAATTGAAACATGCTATCTTACTGATGATGATGAAACTTAACAGTTTAATATTAGTCTTTTTTTTTTCCTTTAACTCTAGTTTAGTATAGGATATACTTACAAATTTACAAAAAAAGACCTTTTAGTTTGCCTGAAAGATGATACACAATGACCATCATCTGTATGAACCAGAGACAATGGCATGCACCTCACAGAAGAGCCACTCCATCATTTGCATCATCCTTCAGATGTAAAAATATGCATTTTACTTGCATTTAGTGTTTGAAATCAAAGTGCTGACTACAGCCACAGTCATGACTTTCAAAAATATGCAAATAATATAACCAGACAGAAACAAAAGTAAACTCTGTAAGGTATATGAAGTAAGCAGCCTGCCCTATTTAGATCTGAGACCTAGGTCTCAGCTGAAATAATGAGTCCATTTTTGGCTACCATTTCAAGAGATAAACTGATGAAAGAGAGCACAAAATAATGAGAATGATCTGAGTTTTGGACAAGATCTGCATGGAATGATTGAAGGAAGAGTGAAGACGTGAAGATTATTTAGCCTAAAGAAAAGGCAGCAAAAACCAGTTTGCAAAGTATTGCGGACAAATGATTGGTACTGTGTTCTCCATGTCTGTAATGGCTATGACGAGGGATAGCCTTAAATCGCAACAGTAGGATTTAAATGTTGGAAGCAATAAATACAAGTGCTGATATAAATATTTTTTATGAGGCTGTGGATTTTCCATCCTTGAAAGTGTTTGAGAACAAGTTAAACCTCTATCACAAATTAAATAAATAAAACCAATCCCTTGCAGTTCAAGTATTCCACGAGGACTTTAACTTCATCCATCTCTTCAGTTCTATTTTTTTCAAATTTTTCTGTAATGTTTTGGTCCTCTAACACTGTACTTTGATTTCACCATTGCACTCTAAGCTGCCTGAATCACTTCTTTTTTTTGTTGGCTCCAAATGTGGAAGTCATTGCAAAATGGATTTGCTCCTTTTTAGTATTCCGCTGTTTCAAAAGAATAAGGCAACTCTTTTCAAAATAAAATTATTCCTTTTCATTTAAAATCCATTGCAGGATGATACCAGATGTTTTGTATGATGCATAAGCAAAGCTTTTTTGAAATACTGGCTAGAAATTAAACTTCAAGGTGTTGGAGATATAGTAATAACCATGGATGAGGAACGTTCCCATCCTGACTTGTTTCTATGACTAATCTCTATGACAAGGAATATGAAAGAACCAAAGATCTACAACCTTGTTTAGTAAAATTGTAATAAGGATTAAATGACCAAGAACACTCTCAGTTGTTGGTTTTATTCTGGCCATGACTGAATGATTGCTACTTGGAAATGCTGCCTAGTCCATGACTGTTTCAAAAGAGTAACTAATTGCTGCAATAGAGAAAATGAGTTTGTCTTTCAAATGCGTTGAGGAGGAAATCTACACTGCATTGTCAAACAAAACTTTACACATATGGATTAGAGTCAATAGCTGTAAAAGCTCACTAAATGCTGTCACTTTTAAGGCATATTAAATATTTGAAGCACATACAGCAAATTCTGTTTTTACAAGATCACCTTAAAACATAGTTGAGGATTATAGCCTCTGTAAAACATAATGCATTTAGAATGAATATAGAATCACTACATCAGGTAAAATCTTTTATAGTAGATACAAATCAAAATTCTCCTTGATACTACAGTGTTTATCTTTTCTGACCTAATCAAATCTTCGGTTCCCTTGAATTGCCACCCTACTGATGACATCAGTAGTCACTGGTGGCAACTGAGTTACAAAGCCACTGGTATGACTTTGATAAACATTTAATCTACTAAAATGACACTGCATTCTAGCATTTGTGATAAATAATTAGAAATAAGTTAATTACATATTCTGCTTAACTTACTAATATAAAGACAAATGGGATACACAGCAGTGTACCTTATAAGCAGCTCTAAAGAAAGCCAAAATGCAAAATTGTGGATAAATCTTATGTATGTTGCACTAATAATGCCGGGTGCCATATTCAGTTGCTGGAAATAGTTTTATGAATTGTCTTAAAGTTATATTCTTAAATAGGTGTGTACTGTTTACAG
Seq C2 exon
GCTACATTTAAAGGCTGGATGGATATTATGTATGCAGCTATTGACTCAAGAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010943:ENSGALT00000017814:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(40.6=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(7.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]