GgaINT0047732 @ galGal4
Intron Retention
Gene
ENSGALG00000009293 | CHN1
Description
N-chimaerin [Source:RefSeq peptide;Acc:NP_001012970]
Coordinates
chr7:16275858-16285252:+
Coord C1 exon
chr7:16275858-16275935
Coord A exon
chr7:16275936-16285167
Coord C2 exon
chr7:16285168-16285252
Length
9232 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTCTGCTGCTGTCTTCCAGGTG
3' ss Score
12.44
Exon sequences
Seq C1 exon
CTGACATCGCTTGTCAGAAGAGCGACGCTGAAAGAAAACGAGCATGTTCCCAAATACGAGAAGATTCATAACTTCAAG
Seq A exon
GTAAGAAATTCCACTGCTTATTCCTCTTAAAGGTACCGTTGGGGGTTGCGTTTCACGTTGGGTTGCTGCGGTGTTGCAGCGCAGTCATACATCTGCAGGCTGTGACTCTGGAAACTTACCTGCTCCCATTACATCTCACTGCCCGTCACAGCAGAGGGGCATCTTCAGAGCACTGCAGCGGTGGAATGAGGGTTCCATTGCTGGTTGTGTGTGTGTGTGAGATGCCGTGTGTCACATCCAGGTTATCCGTTCCATTTACGCTTGTTCGGTACCGGGAGATGCCAGCAGTGGTGAAACCTGCCAACTTTTCTTTCCATTCTAGTCGCTGTAGTTCAGTGTTACTTATGATGATGTGATGCTGAAAAGTCGTTTAGATCTGATTAGAGGATTAAACAGATCTCAGTTTGTCGCTGGTAAATGGCTTTGGAGGTAAGAAGTATGTTCTGCTGCATCTGGACCGAGCAGATGGTCTGTGTTTCCCTTCGTGTTAATGAACTGAGCGCGACGAGAGGAGCGTGGCTGACATGGGGCTGCTGGAGCTGCTGACATGGGCAACTACCTTGTGGTGTAACCACTTCTGTCCGGCCTTCTATGTCGCTTCTCACTGTTGTGCTGATGGAAAAAGCAAACAACAAATGCCTTTTGCGCTTTATTAAGACATGTTAATGCAGCACATGCATGTTTTGTGTCTGCCTGTAATAAGTGTCTGGTGAAGATTCAGTACCTCAAGCTTTGGCAGTCGGATAATGTGCAGTCCTGGTTTGTAAGGCTGAGTGAATTGGTGTCATCCCAAATTCCTGCAGCAGTCAGTATGAACTTACAGACAGGACACGAAGCCCATATTGTCATTTTGATGAGTTTTTACCCTATATAGCTTTTGCTTTTACCGACTTTAGGAGAAGAGGAAACCATTAATGTCACGTAGGTGTCTGATGACTGAATTAATTATGAATCTTTTAATTAGCTCATATTCTCAATTTTCATTCCCATCACACACGTGTGCATGTGTGAATGCGCACATATGTGCATGTATGCATACTTACCTCCAGGCAGCTGGGTTTTATCTTCTTCCTTCTGGCTTTTCAGTTCAGATGATGACAAAAATTGGAAGCTGTGGACGATCGGGGTGTTTTGTTGGACTTCTTCACTGAAGCACAGATTTCAAAACAAGATGCTATATGAAAACAGCATTTCATACGAGCTCTTGGCATGGACTAACCCTGCTGCCTGTCAGTTAAATGCACAGCCTTTTATTTTTTCATCAAGACCCTGAGTTGTCCTACAGATCTGAGGCATCTTGCAACTTTCATTTGTTCCTTAGAGTCTGAAGATGGTTCCTGCAGATGCCAGCAGGCAGTGGTTTCCCATGTACCACAGCCTATGTAGGGTAATAAGTATTTAGTTTTGCAAACATCTCTGTTCCTTAGCTGCTTTCCTTTAACAGACTGAAACACGGCTGTTTTGAAAATAACCTGATAATTTGATTTTCATTCATTTGGGTTTAGTTGTTGTGTGTGTGTTTGTTTGTTTTTACCCTGAAGCTGTTTCTGAATGGTTGTGTAGCTGTGAATTTTCCAGCTCTTGTTGTGAAACAGGCTGCATGTCTGATCCAAGGACATACGTACAGCACAGGCTTCCCATGCAGCTTGCTTTCTTGGTAATAGTCATGCTGTAGTTCCTTTACGTGTACAGCTGGTTGGAGAACTTACCTTTAACAGCAGCTGGTTTCTCAGGTCAGTGAGGTACAGTCAGCTTGCACAGGTAACTTTGCTGTGGAAGAACAGAACAGAATGCGCTCACCTGGAGGGGTGTGCAGCAATGCGCTGAGGGCGTGCTGCTAAGTGTGGCTCCTCTTCTTTCTGTGAGGAATAACTGCAAGCCCTTCAGGATGATTGCATGATGGACTTCAAATGAATGACTTGTGTGCTTCTTTGCTTTATTGTTCTTCACATCTGTCCAAATTTTCTTCCTGCATGTAAAGATGTCACCCTTTGCAATGCCTCAGTGGGTGCCCTAGGTTGCCTGTCAAGCAGAAAATGTGCGACCCGTGTAGGAAGGAAGGAAATGGCAGCCCCAAAATCCTTTCTGGGCCTCTCTTTGGTGGTAGACATTTGAAACAGGAATCAAAGTGAAGGCGTAGGGAGGGCTCGGCTGACCAGAAGCAACTGCTGTCCCCAGGGCCCTGCAGCAAGGAGACACTGCTCTGCACCCCTGCAGCCCACGTTCTCTTGGCAGTGCAGGCACGAGGCAGTATGAGACCTGACCCTTTGCCCAGCTGCTGCTTGGACCAGTCATGTTGATCAGTCAAAGAAATGACCAACTCTTAGAGATGCTCTTACACTGGAGGTATTATGGCATCTCAGTGGAGGGAGGAGGAATGGAGAACGGTTAATGCACAGCAGCCAGTGCTGGTTTCATAGAGTAGAGGAGATGGCAGCAGGCACCCAGGAGCAGGTCTGGGCTTAGGACGTTGTGATCCCTTGGCCACCTGTGCGTATTCCATCAGTCACCTCAGGCTGTGGTGGCATTTGCAGGAGTTTTGTAGCTACTGACAGCCCCAAGCTCAGATGCCTCATGCTCTGCAGAAGCCAGAAGGCATCTGTGCCCATCAGAGCCGGGCTGAGCACCGCGTCTCCGTGCATCACGTTCCCTAGCATGTTGTCTTAGTTCTCTTTTGCTCTTCATTAGAATACGTATGTCTCCAGAAGACTGCTTTTCACTATCTTTCTGTGCAGTATTGATACTGCTACACTATCTATTCCTTCGTCACTATCTCACTAATGCCCAAGGCAGCACAGTCAAATTAATTACAGTAAATAACACTTGTAAGGCTGCCTGGTAGATCAGTGAACATTCAGAACACAACTCCCTTTCAAACCAACGCTTCTTCCAGAGAGTAGAGGTGTTTTTCCACTGTTGCTTAAGCCACACCATTAGGATAGTCTTGCTTGTTACAGTTCATCTCTCCGTGCTGAAGCAGCCTCCTGAGGTGACCCCTTTGGCAGGGCGGCAGAGCAGCCCCTGCACATGTGAGCAGTGGGCTCGGTGAGGACCAGTGTCTGCTGGAGGGACCTTGCCAATATGGAGGGACTCAAACATTGCTTTAACAGACAGACTGCTGCTACTAACAAGAGTCATTTGTTTGAAACAAATACGCCAACCTGGCCCAGAATTTACCCATGTAATTGCATCTGTGCTAGGTGTTCGCTGGTGTAAAAAGCCATAACAAATTGCTTCCATGCCAAATCACATTGTTCTAATGAGCTGCTCCTGAGAGCCGTGCCTAAACACTGGGAGCCAGCAGGTGGAAAGTGCAGAAGAAATGCTGCAAGGAGACCTGAAACCGTAACAAACCTTCACTGCATTGAGCAGAGAGCCATTTTTGTGTGACTTCTGACATGAACTCATTTCTATTCCTGATCTTCCAAAAAGTGGGGCAGATGCCAATTTGGGATGCGTTGGTCGATCTCCACCAAAGAGAGAGTGCTGCTTTTGATGCAGCCCAGCCCTGGCAATGAGAAGATTTTTCAAAACATCTTTAAATGAGTCACTGTGCTCGAATGAATATTCAGAAGGAGAGCTGGGCGCCGCTAGCACAGTCCCCGGAGAGAGCCTCTGCACGTACTCAGAGATAAGAGAGCCTCGGGAAATGGGGGGTTTCTTTTGGGCTCCTGGTACTCGGGGAAAACATGTTCAAAGGCAGTGGCAATATCTGCAGAGCAGAACTGGAGAAAATCCTCCACGAAACTTCTGAGAAGATCTTGTCAGCTCTGTGTAGCTGCTTCTGAAGCTCAGGGTGCGTTATACGGCAGTTCAAGCCAGAAAAGCTTTTAGGCATGGATGGATTTCGTTTTTTCCTCTTATGGTATTTATTTAATGTTTCTTTTTAGCTTTTTTTTTTCTTTTTTAAAGCCTTGGCTTTTCTAAAGCAGATTCCCAATAGTGCATTATTATTTAACCCTCTCTGCTTTCTGAATGCTAAGCCGTGAATTCAAGATCTGCCTCTGTTTGGGGTTTTGTTGTATTTTTTCTTTTTCTGAATCCGTATCTCGGCTGTAATTCCATCCCACCTTACTGGTAGCTTTCTAAGTCATTAGCTGTAGCTCTTGTGGGTCTCCCATACACACGGCCACAGGAGCAAAGCAGCCCACGAATGGCAAGGCTCAGAAACACTGAAGGGACTGGGCAGTGCCTCCAGGGGCAGGGAGCACTGCTTCTGCTCTCGTCAGTGCTTTTGCCTCTAAATTAAATGTAGCATCCATGCAAAATCACTTCTTTAGGGATCTGTTGAGGTTTTGTATTACATTTATGTCATTACGTGGAGCGTATATGACATGTATATATACATACTATTTCAAGTATAAAGATTGCATTCAATTTTCACCTATAGTTTCTGAATCTTGTATATAGACACAGGTGTTAAGTAACCTAGGCCTAGAATGAAATAGTGTTCTAGGCTCTAGATATCAATTTTAAAAAACCAATCTGCTCTTCCATTCAGAGGGAAGGCAATCAGTTTTGTTGCATTTACAAGGCAAAAAGCACACAACCCGCTACTCTCTCTGCCATTTCTTGCCTTGTCTCTCCTAGAGCAGAACCCGACCCCATTTTCCAGTTGTTCTCATTTCTGCTGACATGATCTGCACAAACCAGGAAGTCAACGTGACACGACAGCGCTTTGGGCTCCGGGTGAGTGAGGGCTGGGAGGAAGGGCTGCCTGCTCAGCACTCATGTCTATGCCCACTGCCCATAGCCATGCTATTTATACTTGATGCTCTGAACCGCAGCCTCCTTCTCTAGAGCTGCTGGATGAAGTCATTGGCCCGATCCCAGGCTGGCTCCACATGTGTAGCACCACAGCTGGGTTAGGCAGTCAGCTCGGCTTTCGCTGGTTCATTGCAGTATTCTCATTACGCTCATTCCTGCTGTACCTTCACGTGATGGTGAATTATCTTACAGCTGTGCTCTGCTGTGCGTGTTGTCATGGCAGTCTTCTTGTTTCTGAGATTACTCAGCAGCAGCAGCGTTTGCCTCGCAGTAGGAAAGTGGTCTTCTGTAATATTTGGAATGCTCGAGACCCTTGTTTTAGAGGGCCTGTCTGTTGTTAATATATGCAGACACTGAGTTGACACCTTGGCCAAATCAATAGTTGAGGCAGTTTGTTTTCTCACTGATCTCTCTTCTATGCCCTTCACATCCAGGCATCCTCTGTCTGTACCTGGGGTGCATACAGAGGGCATGCCTACTGGGTGCCAGCGTGGGTACGCCCAGTGCCTGATGGAATCTGCTGTGACTGAGGAGACAGACGTTAATAATACAGGCTGAGTTATCGTTTTAATTGAGACTTACAATGTCTATTGTATCCAATTAAAAGCTTGGTAGAGTCCCAACAGGCAGAATTCAGTTGATGGAATTGCAAATCAGCGAGGACCACTGAGCTGACAGGCTTCATCAGCAGCGCCCCATGATCCTTAGGCATTTGTCTGAAAGACACTGCTGTAGCCAACAGAACTGCACCTTGGGAGCACCATGCAGCACAGGTTCCTAGTGTGTGCCACCTCTCAGCCCCCAGCCAGCTCGCTCTCCTCCAAGAACCAAGAGGGCCGTTCAAAGCAGAGGGCTCTGGAAGAAGGTAAAGCTGCAATACTTTTTCCATCTTTTCTCTAGTCAATATCTTTCATTCCAACACAGATGATGTTGCCTGGATTTTCCAAATCTCACTCTTCTTGCCAGCAGCTCAGTGTGGAGGGCTATGGAAGAGGCTACGCTACTCTGTTTGGAGCATGGGTGCTGATGGAGATGCTGTCCAGGGAGACCATGGCAGACTGTAACAGGGACAGCTTTGTTGTGTGCTGTCAGTGAGACTGTTTTCTGAGTTCAGTGTTTATTTTATGTATACGTAGTTTGTCAGATCCAGCCTTGCTTTCTGCCCTGCTAAAGCTGTGCAGATCCGTCCTGTTCTTGCACGTCACATTTCCACAGCACTTTGCTGATATTCTCTCGCTGTCTTGACAAGTTATATAATGCAAGTTGCCCAGTTTTGAATGCTAATTATCTGCTGGCTCATTCCTGGCTTTCAGATAACAGCCAAAGAACTGCCCAGTAAAAGCAGAAAGCATAAGAAGTAAGTGGGTTTATGCGGTATGTAGGTAACTTCAGCAGTGACTTCTGTAGAGCCTGAGAATTATCGGAGATGTGCTTGAGGAGCTCCCAGCTTGTGGTATAGGCTGTTGTCAGTCATCAGATCATTTTTTTTTAATTATTTGCTTAAGTCTGCCTCTTTTTATAAGCAGTATTTTAATTAAACACCAGAAAAACCCCAAATGATATTCTGTAACATACACGGTCACTAATCACCAGAGGTAAAATATTTTTCCCAGCGTGTGAGAAAATGTCTTTCAAACCCAAAAAAGCACTCTCCTCCTACATGAGATCCCAGTCCTTTTTATTATACCTTGCTGTCGCTGTGGGAGAGTTCAAAACAGAAACGCCAATGTGAGGTTCCCTTATTATCCTTAGACTTGCAGGGCAGCCTAATAATTGGATTTTATCTCCGTTTAGAAGTGGGTATTTTCCTTTAAAATGATCTAGAATTAGATTTTTCTTTTAAACTCCAGCTTGAAGTCTTGTGGAAGGAGGGAGAGAAGAGGATTTTTGGGACGGGAATGAGAATGAAAGATCTGGGAGATGCAAAGCCCAAGCTGACAGTTCTGTACTCCCACATTTTATAAGACATCTGCACGTGGCACATGCTCTTTTTACAAGGGGAAAGACACACCTTATAATTTAAGTCAGGATCTCTGGAATTCTGCTGGGTGTGTTGTCAGAAAACTTTCTGGAAAGGCATGTTTTAGTTTTGAAATAAGCAAGTCACTTGGCAGGTTTTTAGAAAGGGGAATTGAATGTGAAAATCAGAATGCTATATTAAAGGGTCATGCAATAGACTCAATATTGTTTGCAGGTGCTGGCCCTCTTGCTAGCAACGGGATGCTAACATTCCCTTCTAGCGTGCTGCCTGGCCCTGCTCTGTGGTGTGAAGCAGTCCGAGGGCCATTCTGGCCTCAGAAGACCACTTTATGCTGTTTCTGGCATGGTTTACTGCCTCTGATTTCATTTCCAGCGGTCTGTGCGTTCAGCCTGTGCAGGGCCGGACCTCCAGTTCCGCTCCGTGGCAGTGGGAGGTGAACATTCTGGCACCGCTGGGCTCTGTGCAAAGGCAGTAGTGCTTCCAGACACCAAAAGAGGCGTCAGAGTTGGTCCTGCAGGGTCGCATACACCAGGGGTGGAAGGGCACCATAGGCCAGAGGGACCCTAGTTAATGTTGCCTGGGAACCTCCACTGACACGTCAGAGAAAGGTCAAGGCAAGAGAAAGCATTACAGAAAATAGAAAAACCCACCTGTAGCTTTTAATTGTTTTAATTTTGCATTCTGAGTAATGAATAAGGAAGTAATTTGAATGGGACGGGGTAAAGCTAAGCAGGCTTGGGACAAATGTTCACCTGAGAGGGTAATTTGCTAAGGAAATGTTACCGCAAGGCAGTGCAGTGTTTGCATGGAGCCTGGCTGCGTGGGATGAGAACAGTGATCCCGAGACAGTGATCCTGAAGGGCAAAGGCCGGTCTCCATCCAAACTCGTGAAGGGAATGATGGTACACTGTGCTAGTAGGAAAGAGGGGAGCAGAGGGCAGCCTGCCTCGTCCCTGTTGTTTTGAGTTGCTTCTGGGTCACGGCAGCCACCGTCACAGGGACAGGCAGCCTGAGCCCAGCCTTGCTGGTGACTGCAAGGCAGATTTTGTTTCCTGCAGAAGCTGTGTTAGTCCCACAGGCATTAAAGCACAGCGTTTTGCTTGAGGAGATTATAATGTGCTTATTCTGAGAAGGGAGGGCTGCCAAAGACCTGCAAAAAAGGCAGGGGGCTGAGGAAGAAAGCCAAGAGGATGTGGGTAGCGCAGGTGTCTCACGGAGAAGAAGGTGTGAAAAATCTCTTTGTGTGGAGAGGGAATAAGAAAATAGAGATTGCAGCTGCTGACAGTCTTGTCATCATCTGCTTCACGGGAGTCAGCTGGAGCTGTGAGAAGGGAACAGTTGCACCTCCAGAGTTGGTGGGGGTGGCACTGCCCTGCTGGGCTGGGGGCACTCAGCACCCCGCGCCCTGCACTGCTTCCAGAGGTGCTCAGGGTGAGCAGGGCTGGGAGCCACCGTGTGCCTTGGGGAATTGGAGAGCAGAGCAGTGCACCAACCTGTCTGCTGCCACTGCTTGGCAGGCAGCAAGTGCAGGGAGGTCTGCAGCCAAAGCAGGACCTCGCCTGGATCGCTGGGAGCCTGTTGGACGTGAGTGTTACCTGTGGTCCCGCTGCTGGGTGCACCTGGTGCAGGGGGTGCTCTCTGCCAAGTGGCACTGGAGAATTAGCTGAGTTAAGCCTTGAGAATGTTCATTGTATTTCACTGCGAATTTCATTACTGTATGATTACCAGTTTCTTGCAAGAACGCAAACTCTAGCACACTGGCTAAGGAAGCCATGGTTATCTCTGTGAAGCATCCCATGGTCTACCACAGCAGGTGCTTTATCAGACTAAAACCCAAAGTAGTTCATGGTGTCTGCAGGATTTGCAGCTCACGTGTGAGCCAGGACTGAAAGCAGCATTGGCTTTTTCTTCCCTAGCTTTGTTTCTTCCTGGGTCAGTGGGTTCTTGTTTTCACTTAGTAGACTCATTTAGGTTTCCAATATGTGGCATTAGTCTGGAGAGAATTAATTTCCTTTCAGAGCTGTTTTGAATTGGAAAGCCCTCGGGCCGTTCCTGGGATGTCTGTGCAGCGCTGGTGCTTTGCCAGGCAGGACGCTTCCACCCAGGACTGCTCCAGCACTCATCACCCTGTGTGTCCCTCATGGAGGTCATCACGGACCGAGGGGTGCCAGCAGGCGGGGTAGGAGCACCATCATTGCTCATCCCACAGCACCACAGAGTGAGAGCAGACCCCAACCCCAGCTGTGCTGCTCCAGGTGGTGCAGGATGGGCAGCACCTTCCCACAGCACTGCAGGCCCCTTGGCTGTTCAGTCATTCGGATGTTTCTTTCTTCCTCTCCTGCAATGGTAAAGAGAAACTTCTAGTGAATGGGTGCAGTGCCTTCTAAGAAGAGGACTTCTGGCTCGTTGAGACGCATTGGTTTTGATGTCTGTGAAACAGTTGAGTTATTCTCTGTAATTTTCCTTTCTGCTGCTGTCTTCCAG
Seq C2 exon
GTGCACACGTTCAGGGGCCCGCACTGGTGTGAGTACTGCGCCAACTTTATGTGGGGCCTCATTGCTCAGGGAGTCAAGTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009293:ENSGALT00000042646:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0231811=FYVE_2=FE(23.1=100),PF0013017=C1_1=PU(5.7=11.5)
A:
NA
C2:
PF0231811=FYVE_2=FE(25.9=100),PF0013017=C1_1=FE(52.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]