GgaINT0047923 @ galGal3
Intron Retention
Gene
ENSGALG00000009236 | AGPS
Description
NA
Coordinates
chr7:16838650-16841850:-
Coord C1 exon
chr7:16841723-16841850
Coord A exon
chr7:16838702-16841722
Coord C2 exon
chr7:16838650-16838701
Length
3021 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTTCCCTAACTGTCCCCAAGAGA
3' ss Score
4.08
Exon sequences
Seq C1 exon
GAATTCTGGGAGTGGTTACTGAAGTTACGATAAAGATTCGTCCGCTTCCTGAATACCAGAAATACGGCTCCGTGGTCTTCCCCAACTTTGAACGAGGGGTGGCCTGCCTAAGGGAAGTGGCAAAGCAG
Seq A exon
GTAAGGAGAAGCTTGGTGTTGAATTCATGCAAGTACACTAGTTCTAACCTTGCCCAGGGTCTAGGACTAGGGGTGTGCTGATGCTCTAGCCTTGATTATTGATTACTGGAAAGGAGTTGAGATAACATGAATGATTTAAGTATATATGGCCCCTGAGACTTTTGGAAATGATGCAGTAAAGAATTGAGCATATCTTGTATTTGTTCAGTATTCTGAGTCAAATTGTGGATATGCTTTCTGATGAATTTATTTATTTATTTCTTTTAGTGTTAGCATATCCCTGCACAGAGATTTTGGCTTTTTATCTCCTTCAGTGGAGAGCTTTTATCTGGAGATTTATTCACGAAGTGGCCAGTAAAAGTGACCAGTATTTAAAGGAATTAAGTTGCAGCACACAAGTAAAGAGCGGTTGATTTCTGATTCCAAAGTGATAAAGGAACAGCAGTCATGGAGTGGAAGGATGTGGCTGCGTATGCAGAGTGCAGAGGGTGCTTCTTGAAGTGCAGCGTGTTCAAGTGAGCCGAATATTCTGAGGCAGAACTAACTGTACTTAGACTTAAGTGTTTAAGTAGTGCCTTCTGAATAGCGTGGTCGGTTTCAGGTAGCAAAACTTGGACATCAATATCCAAATTGTGTAATGTTTTTCTCAATGCCTGTGCTTCCAAGCAAGTCTTGCACTGTCTAGCCGCCTCCTTTACGATTCCAGACTAACTTTCCTTGGCACTGTGCAAAATGTACTAAATCACTGCAGTGAATGGAGAAATATATATCCTGAATCGGGGAAGTAATATCAGAAATGTTTTAGTTAATGCCAAACTAAATACAGCTTTACATATTTCCAGTGATGGGTCTAAATTAATGACTTAATGTTCCAAGCCAGTTGTTCAAACTGGTATGTGACTGACATGTATATGCTAGTTATCAGCACTTGCCAGTTCTTTTGTCACACACTTTTACTGCTGGTGCTTGTTCTTCTTATTACAGGCATCTAAGCAACCTAGGAATGCTTAATTGAACAGTTGATCAACATTTTAAGTCAATTAAGGAGGTAGCATCTTTTCCTCAATAAGGGGTTAGAAGAAAAAAAACCCAACAGTATTAGCCACTTATGTCGCTCAGTTACTAAGCTTCTGTTGCTACTACTGTTTCACTGCTTATTTAAGCCTGAACTACTTACTCCTTTCTTCTGGTGTCTTCTTATAGCTATTACAATGATCTCCTAATGAAAAGCTGTGGTTTTCTTTTTGTTGTTGTCTTTGTTAGTCTCCTTTGAACATAAGAGTAACCAACCTGCAGGTTGTAGGCTGGGTTGGTGGCAGTAAAACCACCCATCCAGCCTTTTTTAATCGGCCTGCCAGATAAGATTTTTTTTATTTCTTCCTTCTGCCCTCTTTTGCAGTTGTGTGACAAAGTATGCTTTAACAATATGATATAGAGTGAACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATATAGAGTGAACATATCAAATTAAGTGATAGGGGAACGATTTTACATCCACGTGATTAGATGAAGGCTAGCCTAAAATTCAAACTTCATTGTCTGAATTTCTGTGGCCACACGTTGCATGATTGGGCACCGGCATCTCAGGTTACAGGCTGTGAACATATATGTACGGCCCAAAAGGTTGTTTAGTTGAAGGCAACTACTCCTCTTACTGGTCTCCAGATTTTTGTGCAGTGCAGTCTAGATTGGTTCCAGACACAGGCTTTAATTGTGATCTGCTCACAGAACGTTAGTATACTGGGGTTGGATGGAGTTCTTTTCCTCATAGCAGCCCATATGGTAGTATTCTTTGGTTTGTGACCAAAACAGTGTTGATGAGAGACTGATGTTTTAGCTGTTGTTGAACAGTGCATATGCATTGACTGTTCTCCAAGTTGTTTGTTGGTGAGCAAAAATTCAGAGGGAACACAATTAGAATGGCTGACCCAAATCAATGAAACAGCTATTCCATGCCACATAACATCAAAGTCAGCAATAAAACTGGTGGGAAGTTTTTCAGGGGTTACTGTTGCTTAGGGAATGTCTGGTCGCTGATTGGCCGGTGGTGAGCAATTGCATTTTCATTACTTGTTTTCCTTTCTTGTTTGGAGTGGTTTGTTTGCTTGTTTCCCCCCTTTTACTTTATCTCAACCCGTAAATTGTCTTACTTTTATCTTTTTGGAGGAAAGTGAGTGAGCAGCTGTGTTAATTAGCCATCTACAGGAGTTAACCAGGAACAATTAGACACTTCTCAGTGATTTGTAATGTATATGTAGTTATGATTGCGTAGCACCGTCAGCTTGATACTCTAATCAAATATGATACTTTAGTGCATTATGGCAATTTAGAAATGCACTCTATACATCAAGGTCAAAATCTTGGGACTATGCCTATGTTGGCTTGATGTTAAACTGAATATTCTCAATGCATTATATCTGAACATGCCTAATAGAATTTGCTTCTCAGAAGAAAACAAGTTAATCATCACCACTTTTCAGTGATGATAACGGCTATGGATCTCTGATACCAAATTTGCTTCTTGTGTGCTGTTTTAAATGAAAATGTCACTGTTGTGAGTTTGAGCACATCTGTTCAAAGACTTTTTATTCTTCATTTTTCTCATTTCCCTAACTGTCCCCAAG
Seq C2 exon
AGATGTGCTCCTGCATCAATTCGCCTTGTCGACAACGCACAGTTTCAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009236:ENSGALT00000015032:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=PU(9.9=62.8)
A:
NA
C2:
PF0291314=FAD-oxidase_C=FE(6.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]