GgaINT0048089 @ galGal3
Intron Retention
Gene
ENSGALG00000011082 | KCNH7
Description
NA
Coordinates
chr7:22540418-22548575:+
Coord C1 exon
chr7:22540418-22540843
Coord A exon
chr7:22540844-22548175
Coord C2 exon
chr7:22548176-22548575
Length
7332 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TATATCTTTTATTTTTACAGACA
3' ss Score
9.18
Exon sequences
Seq C1 exon
GTTCTATCCTTAGGGGCTGATGTTCTACCAGAATATAAACTCCAAACACCTCGCATCAACAAGTTTACTATATTGCACTATAGTCCTTTTAAAGCTGTCTGGGACTGGCTAATTTTGTTGCTGGTAATATATACCGCCATATTCACCCCTTATTCTGCTGCCTTCCTTCTGAATGATAGTGAGGAACGGAAGAGAAGAGAGTGTGGATATTCTTGCAGCCCACTGAATGTTGTAGACTTAATTGTGGATATTATGTTTATCATTGACATTCTAATCAACTTCAGAACAACATATGTAAACCAGAATGAAGAAGTGGTAAGTGACCCAGCAAAAATAGCAATTCACTACTTCAAAGGCTGGTTCCTAATTGACATGGTTGCTGCAATACCTTTTGACCTGCTGATTTTTGGCTCTGGCTCTGAAGAG
Seq A exon
GTAAGCTTAAATAAATGAGAAATCTTAAATCTGAAGTTTTGACATTACTACAGTAATCTATATATCCAAATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTGCTCCTTTGATTTGGTGCTTGCTTTGTAAAAACTGCCCCTTTTAAGTCCAAATGTCTTGTTGGTAGTAACACAGTAAACTCTTTTATGTCTATTCAAAATCTTTAGATCAGATGTCTAGTCTGTGTAAAACAGATTAGATGAAATGTAGACTACTTCAAATGATAGCAATTAACAAAAAGATCTGGCTGTTGTCTATTTTCTCAAGAACATGGACTACCAAAAGAAGATTTGGGGTGAACCTTGCCAGGCTGACAGTTCATGTGACTAATGACTTCATTCTATTTATAGAATGGGTTAACAAAATGCTAAATATATGCATCTGAAAATTGCCCAAAGGTGCATATAAGACATACGTTGTATTCTGGTAGCCTGACCCTTTTCTGCCTTCATCCAAAGAATTTTTATTTAATTTAAGATGGTCTAAAGTTGTAACATATAGTTTGATGAAAACTGAACTGACAGGTAGAGTTGTGTTTATTTCTTTTTGTGATGTGTAGAATACAGGATAAAAAACCAGCAAACCCAGCAAAATATGATTCTATCTCTTTTCAAAGAGCAGACATCCATTTCTTAAAGATACAGTTTTGCACATACTGATACAAGGGAGAAAAAGGTTTATCGAGCATGTATACATTTCATTAACTGAGGAAAGTAAAAACACTGAATTAATCAGCAAAATAATAGCATGAAATTTGATTGCATTCCTCTATGTCTTGAAATAGATAAGTCAAAAACTTTTTCATTTTAAAATTAATTCATTTTAATTAAAGCCATCTATGAAACAATAAATATTTCTATGTCTGCCTCAGAAGTCTGAACTGAATTCTGAACACACACTATCTATCCTCACAAGTGACATTTGAATCTATGTATTTAAGATGCATTTTATGTATCTTAATTTATGCAAAACAATTGGCATATACCTAGAAGCACCTTGAGAGTCTTGTGAGATCTTTAAGTCTTAATAAAAATCAGAAGTAGGATGACTATTAGTTGTGCTTTTCTTCATTTTCTCATAATTTATAAAATGAAGAAGTTTTGTTGTCCTTCTGAATAAAATGATCTAATTCAGCAGACATGGAAATCAATAACAGTCCAATCAATAGTGATATTCCTACTGATTTAAACATGAGCATACGCATTCAAGGTAGATGAGTAATCTGGAGACACATGTAGTGTAACAGGATACAGTGGAAGTAAATTTTGTTAAATGAATGCAGTAAGAAGAAAAAGTAATAAAAAGAACAGAGAGAATGCATTAATACTTCTCTTACCGACAGAGAGCTTTTCTGTACAGAATATGACTAAAAAGCTCAGAGATTCAAGAGAAACTTTGCTCACTTTTTGCTTTTATTATGTGTGGTAGATCTCAGTCTTTCAGGATTTTTTTTCTGCAGTTTTGATGACACAGGCACATAAAAGACAAATATTTTGAGAATGGCATTACTTGGACCATATCATTCCCTTGCAAGAACGGTTTTCTCTTTCTGATCACTGAGCACTCATTGCTGCCAAAAGTTATGTTCAGTGAAGAGAAGTGTGGAACAACATGAGTTAGAATGGGGACAAATTCCAAAGCTCAGTGAAGGAGTGCCCATTGGATTTTACCCTGAACATCATTCTCCTCACCTCCCTTGCTATAGAAATCTTTAACAACAAAGTGCTAAGTGCTGAAGTTTAAAGGGACAGTTTTTAACATAAGATAAAATCAAGGATTAATAGCAAACAAGTGCATTCCTGCAAATCAGTACACAAGCATCAAAACGTGGAATCTGGAACATAAATTATTGGACCATGTAATGAGTTTTTTCATATTACAGTTGTAAGTAATAAGTAATTGAACCGTTATCAGGAAAAAGTTTGTTTACCTAACCAGTAATATAGACATTATGAACAGTTAATCATGCCATAATGACTTCTCTGCTTCATTCGTGGTATTGAACATATCAATCAATTTCTCTAAGCTGCTACTTACTACAGTTTTGCTTCCTATATTGCTAACTGTAACATTTCCACAGTAATCCCTTTTGATAGTTTAGAGAGAGGAAGAAAATGTATAACTGTTAGAATGAAGCCTTTTCCATTTAATAGATTTTTTTTCAGACATGAGGGTTATCTCTTTTATGAAAAAGCTCTTTTTTGTTACCTGGAGATTCTTCAGAAAAGATCCCCTATGAACAATTGTACTGAACTCTCTCCTTATTAAACAACATAAGCTCCTACGAGAGCTCTGTGTGTGCTCACCCAGCTTTGAAACACCTTGATATCAAACTGAGTGTAGAAAGGGCAAGAGACAATAATCCAAATAGCACATGCAGCAGTATCTGAATGCTTCCATTTGAGCTATACTTTGTCAACCATAGGAAAGCAACAGACAGTTTACTTTCCAATTTCTGAATTTAGGAACTAATATAATTTACTTATTATTATTATTATTATTTTCTTTTTAAAAAGACTCTTAGAATGATTATGCCTGTTAGTAAATGTTTGCCTTTGAGTGTATGTGTGCTTTAAATATTAAGTGATATCTTCAATACTAGGGAAGAGAAAAAAATGGGTAAATAGACTTCTTGGTTTCTATTCTTTTGAAATGTTATTTTTAATCATGATGCTCATCAGAGAGGTCTGGTTCAGATTTTAAATAGCTAATAGTTGCAGTGGCACATCTCCTTAAAACATGAAGAGATAATGTCCATGTATAAGTGAAATGCTGCTGAAAATTTCTATATATTTTTAGGTATATGCATTTAAAATAATGCAACTTTTCATGCATTCACCATCTTTACACTTCAGAGATAGATACATTGTAATGAAAAATCAGATGGGTGTAGAGCAAAACAGAATTTCTTCCCTTTCATCTCGAACCTACTGCAGTAAAACAACTCAACAGGTGGCGTTAGCAGGATAATTTTCATATTTTTAGTTTTATTTGAGGCCAGACAGAATACTTAGCTGAAATATGCAGAAAAGCACCTTTTTTTGTTTCTACAAATAATAATGATCAAAGCTATTTTACAAAATGTGATTTTACAAAAACTAATTTACAAAACATAAACCAAAAACAACCATCAACAGAAAAAATTGCTGCATTAGGAAAAAAAAATACACCATGATACCCATATACAGCATACACACAAAATGTAAGTGACAGTATCTTCTATTAGTAGCAATAAACAATTAAAAAAACCAAACAGGTGGTTTTGGGGTAAAATGGAGACATACATTCAAAGCACTCTCGTTCTTTTTTGATATAGTTTTGATACATCTCCACTTCACTACATTGTGTATCTGTTAAAGTAAACTTAAAAGAAGAATCCCACAGTTCTAGAATAAGAGATTGAACCTGATAGTCCTGACTGCAGCATGACTGATCAGTAGGCTTTAACATCACCTTCAAAAGGCTAAATTCTGGCATGTAATAATGATTTGTCTCAGAGAGAAAAAATATAGCTGTGCTTAATGCTATAGTAGTCATGCCTTGTAGATTTAATTGCAGGCTTCAAGAAAGGGAGAAGGATGTTGATTATTTTACAAAAGAAAATTAGATAACAAGAAATTACTGAGAAACAGAGGACCTTACAATACCAGAAAGCTGGAAAGAACCCTGGTAGACGAAACACTGTGTAAGCGAACGCACCTTAATGTACATTAGAAGAGACATTTTGAGCTTCTCATGCATATCAGTGTTCTTATTTTATTTATAAAAGAGACAAATAAGACATGACATTATAGATTTATACATTAATGATAATGGATGCTATGAAAAAATGAAGAAAATTCCCCCCCCCACACACAAATGTAGAGTAAAACTATGAATTTGGACATCAGTGAGAAGGTCATGAGTCATAAATGGCTTTTTGCACAGATAGAATACTATTTATGCAGATAATAAATTAGGTCATAAATACCAGCTCTCTCTTCCAGACTGATACAATAATAACTTCTGAATAATACCCTCTGCAGAGATTGATGCCTTCCTCTTTCCAATCGTGCTGTCATCAATTGCTGTCCATCAAAGTAGCTTGCTGCCATGATCCCTTCATCATCAGGACCCAAGACATTGTTGGTATAAACAAATCTCACTGTTAAAAAAGAAGACTCATCAGACTTAAGAGTACCCTATTGATATATGTAAATATTTTGTAAGATAAGTTCAGCATCCTGTACCCAGAAAACATTTGTCCAGGAGGCAAATAATTGGCAAACTTTAACCTTTCCCAAGGAAGAACTGAATAATTATCCCAAAATCATTAAAGATACCTTTGGCACCTGGGGTGGGATAATGTGTACAATGTACATATATGTAATATACACATATATTACATATGCCATATGGATACTTTATCTACAGACAGGAAGACATACCCAGGACAAGATCCTGGAGAGCAGCTCCACAGTAAAGGATCTGGGGTTCTGGTAGGTGGCAAGGGTGCCCTGGCAGCCAAAATGGCCAGCCATACCCTGGGCTGCATCTGGCCCAGCACTGCAGCCAGGCAAGATAAGGAATTGTCCCACTCTGCTCTGCACTGGTGTGGCCTCACCTCAAGTACCATGAACAGGTTAGGGTACCACAACATGAGAAGGGCATAAAACTAATAAAATTATTAGAAAATGTACAGAGGAGAGCTACAGAAATGTTGAAAGGTCTGAAGGGGAAGACATGAGGAGCTGCTGAGGTCATTTGGTTTGTTAAACCTAGAGAAGAGGAGACTAAGGAAAGAATTCATGCTTTCCAACTCTACTGCCAGCTCTACTTCTAGAGTCAGTGCCTCTCCATTGTGTTAAAGAAAATACAAACTCACTGTGAGTTTCTTGATTGTTTAAAACATATGCAGCTCCACTCTGCTGATTTCACCATGAATACCTGGAGTTTACTTGCATTATACATCTCAGGTATACTCCAGAGCTCACATGGATGCAGTATCTAAGCAGGAGTTTGACACTGAGCATGTATAATATTAGCAAATCTTATCTTAAGGATAGTGTGGAAAATTGTTGACAAATTTGGGATTCACAGTTTACTTACATACATTTTTACAATGCAGTGTAAGAAAATGTTGCATATTACATAGTTGTCAAGATATGACTACGTCAGTAATAAAATGGTTTCAACTACACCACTAGAACAAATGCTAGCTTTTCTAAAGTTTACTTTCATCATTAAGGAATTATAATTAGTAAAGCCTGATCTAACTTACAAAAAAATTTCCCTAATGGCAATATTTGCACACTGAAGCTTAACATAGGAATAGCTTTTGGAAAGATATATGGTTTCTCAGACTATTGAGGTCACAGTCAATCAAACAGACATTTTTATAGAAATTCTCCCTGATTTGTTACCCAGCTTTACTGTACATTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCCAGCTTTACTGTCCATTAACCTCTTGCTTGTTTACTCAGAAACATAGACAGTTAAAAGTTTATTTTACTTGTTAATACATCCAAGCATCCAAAAAAGTTTTCAAGGTGCATACTTGATAAGCAAATGTCTAGAAGAAAGGTTATGGTGTCAAGAGATGATTTCTACTTCCTTTTTAAAAAATCAATAAATTTTAATTCAACTGCCAGTTTCTTCATTTTTGGCATCTCTCATTATCATACATAGCAGGTCAAGAATAATACTCAAAATGAACAAGTATTCAGCAGATAATGACAGTGGTCAATATATCTTCATTTAATATATGCACTGCTTATTGTTCTCTTCACTGATTTTGTAATAAATTTGATAGTTTAAACAAAATAAAATCAAGATTCCATTTGAAAGGGTTATTCTACTGCTTACTTCCCAAAAATAATGGAATCACTTCTGGTTTATTCATGCTAATTGAGAGTTAATTTGCTAACCAAAAAAAAAAAATCATTTTGTGTTTATATCTTTTATTTTTACAG
Seq C2 exon
ACAACAACATTAATAGGTCTTCTGAAGACAGCTAGACTGCTGCGTTTGGTGAGGGTAGCACGGAAATTGGACAGATATTCAGAATATGGTGCTGCAGTTCTAATGCTCCTTATGTGCATATTTGCACTAATTGCACACTGGCTTGCTTGTATTTGGTATGCCATTGGAAATGTAGAAAGACCTTACTTGGCTCACAAAATTGGCTGGCTGGATTCTTTAGGAGAGCAATTAGGAAAACACTACAATAAGAGTGATGCAAGTTCTGGACCATCCATCAAGGACAAATACGTTACAGCACTTTATTTTACATTCAGCAGTCTGACAAGTGTAGGATTTGGAAATGTTTCTCCAAACACCAACTCAGAGAAAATCTTTTCCATCTGTGTCATGTTGATTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011082:ENSGALT00000018056:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084125=Ion_trans_N=WD(100=36.6),PF0052026=Ion_trans=PU(31.0=45.8)
A:
NA
C2:
PF0052026=Ion_trans=FE(63.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]