GgaINT0048477 @ galGal3
Intron Retention
Gene
ENSGALG00000010930 | STK39
Description
NA
Coordinates
chr7:20580126-20583998:+
Coord C1 exon
chr7:20580126-20580259
Coord A exon
chr7:20580260-20583949
Coord C2 exon
chr7:20583950-20583998
Length
3690 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
ATTTATTATTGATCTTTCAGGCC
3' ss Score
8.5
Exon sequences
Seq C1 exon
GTGTTAATGCTGACGCTGCAAAATGACCCTCCCACTTTAGAAACTGGTGTAGAAGACAAGGAGATGATGAAAAAGTACGGCAAATCCTTTAGAAAATTAATTTCTTTATGCCTTCAAAAAGATCCTTCCAAAAG
Seq A exon
GTAGGTCTTTATTGCCATGTACGGTTTAACTATTTTAAGTATAGAGACTATTTACAGTTTTGGTATTTAAATATCATTGCCCTTCAGTGTATGGTTTGGATTTTGCAAATATCGGCTGTCAATATCTTCATCTAGGGAGAAGATATCTTCTTTGAAGTGTCACTTAAGTTTTCTTCTGAGTTGTTAACCTCATTTGCTTATATTTAAATATCCTGTTCTGATCAAACAGTCCATGCTCTATACCTTCTTTATTGCAGGCAAGATAAACATCTTGATATTATCCATAAATCTAACAAGACTGTTCAGGTTGTTCAGACAAAACTATTGGTAACTAAACATGATCTCTTGGCCTCTAAAAATTAGAAAAAGAAAGTACTAAATTACTAAGCTCAGTATTACCTCTAACTTAAATGTCTTCATAGAAAATTATTTATTAAGAAATATTTTTGTAACCTGAGATGGGATGCTCCTAGCTTGTTTGGAGTTTCTAAAGTTACTGTAGGCTATTTTCTTTACTGTTTTTTTCTTTATTTGATGAATGGGGTAGCCAAGATAATGGAAATGTTAAGCATCTATTTAAAAACTATTGCTCAGGTTCCAGGTTCCCAGTGCAAATCATTTATTTATCCTTTATTTGTTTTTATGCAGACCCATATTTGTAGGCCTCTTTGTGGAAGAGGTGGAGAAGGCAGATTCTAAATAACATTATTTCCAGAGAATGTTCAGTGTATCACTTTAAAAACTTTCAGATCTGACGTTTCTGGGGAAAAAAGAGATAGGTCTGAGGAGATTGATGATTGAGTGGGCGTGTAGGTCTTTGCTGGTGTTCCACTGGCATTAAGCCCAGGGTATGTAGTGGTCAAGTTGAAAAATGGCAGCAGCAATATTAGAAAATACATTTAATGAAGAAAAGGAATGAAAGTTGCATAGCACCATCCTTATTCTTGAAATCTTCCAAATTCAGCTTTGTCTGAGAAGTCTTTGCCATGTCCTTTACAACTGATGGTCTTATTAACAAATCTTAATGCTTGAAGCTTTTCACTGCTACTTGCTGGCCGTTTATAGACAGGAATGAAATCTTCTGGATAATTGAGGATAATCTTTTGTCTCTAGAAGTTCTGGATGCCCCCACCCTGGACATGTTCAAGGTCATATGCAACTTGACCTAATGGAAAGCATCTCTGCCTATGGCAGCAGAATTGGAGTAGATCTTGAAACCCTTCACACCCAAATAATTCTGTCATTCTATTCTGTGAAGTTTCTTTTAAGTTTCCAGTGTCCAGTAATTTTCAGAGAAAGGTTAAATTGGTATGAAAACATAATTAAAAATCTTTCTTTCTTTCCTTGCAGACATAATGCCTGGAGTTATCTGACGTCAGTGTTCAAACATTAGCGTTATCATGCATGTAGTATTTTCATACTCAAGTTTGATCTGAACTGAACAGTTAGCTTATCACATATGGGTGATGAGCTCTATGTGCCAATTATTCTTCACATGACAGTGAGCATTCCTGTGCTATAGGGTCATTGCTACTTTTTTTTCTTCGTAGTCTGGAGTTAATTTGGCAGAGATACTTCAGTAGTTATGTCAGTTGTGGAATCTAGCTTTTAACTGCATGTATTCCTGATAATGAGATATGATGGTTCTGGATCACTAAACTTACCCTAAGATTTGAAGTTGATTTAAGGCAGAACTTTCAAAATTTGACATAGAAACTGATTCTTAAAAGGCTCTCCTTCATTTTATCCATCCAAGGGCTATATGTGAATTACAAGTAAGGATGGCGGTCAACACATTGTCACTACTAAGAACTCCTTTATTTTAGAGTCAGGTACTTCGGTGTGGAAGCAGAATAAGTTCTTGTGGAACTACTGTCAGTGTCTACATTGGATGCTTATTGTTGATGACCCAAGTAGTTTCACTATTTCTAGCAGGAGTGAACAGATCTATGTACTATTCCTGTTTTCTTCACATCCTTATCGGATGTGACCTCAGAGAAATAAAGCAGTTCAGATTTTTCTTTCTTGATGTCAGAACATTCTATAGGAAAGCTCTCCCCCCGTCTTATCTAATCTGATCTGTATCCACTGTCTTGCCGTAGTTCAAATGAAAAACTATAGCGAATATTGCTTCTGTTTGTTTGGAAATTATGAATCTTAGAGATTCCAGCTTACCTAAACCCAAAAATTGGTAGGGGTCTCTGTTCCTAGTAGTATTAAAGCAAACAAACAAACAAAAGCAACAAGTAAGCCACATCTGGTGGTTTTTAGGTCATCCCAAGAGCTCTTCTTTTCTCTCTTCAGCACCATATTACAGTTTTGTCTGGGTTTGTAGCTTTAAATCCTTGAGGCTAGGGGGAAGTAAATCCTTTTATTGGAATAATAATTTCAGTAGCTGAAAGATTCTGAAAATCTGTTGGAAACATCAGAAATATAAACTTGAAGATGATGAGAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAAGATCTGAATCTGTTGGAACACCAGAAAGGAAACTTGAAGATGATGAGACGTATAAAGATACTGGGCTGGGTTGAAAAGGACCTCAAAGATGCATAAAGAGGGGCAACCCAACGGACTTGAACAGAACTACAAATAAAGTTGAAACATCTGGGTTTTAACCATACAGCAGTTGATTTGATGTTTGTTGAGTTCTAAAATGTTCCTGATAACTTTCTGGTTTATGCAGCATGTTAATAGCGTCAGTACAGTTAATACCTGTTTGCATCACAGAAATAAAATACTTCAATTAATAGGTATTGATGCTACTGTCTAGAAAATACAATCATCCTTTCATTGTTGTGGAGCAAAGTTCAGTTACGTTTATGGAGACACTTCAGGAAGCACATTGCCTGACTTTTTTTCTAACTTTCTTTGTTTTAAGGGTAAAATGCATTTCTGTTTAAAGAAAAAAGGCAAAAATTGGCAACTTAGGTACTGATTTTTTTTTTTGGTATCTTTACCATAGGGAAACTTAATTTTTTCATGTGTGGTAAGTAAGTATGTGTGAATTAGTTTAGTAGCTATTGCCATTCATTTCCCCATTCATACAGTACTAATTAAAAAATATTAGAGACGTACTATTTAACTAACGCCCTGTACTGTATTCACTGAGAGGGGTCTTTGTTTCCTGTTCTAATTTATTATTGATCTTTCAG
Seq C2 exon
GCCCACAGCAGCAGAACTTTTAAAATGCAAATTTTTCCAGAAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010930:ENSGALT00000017779:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.4=100)
A:
NA
C2:
PF0006920=Pkinase=PD(4.5=70.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]