MmuINT0154251 @ mm9
Intron Retention
Gene
ENSMUSG00000027030 | Stk39
Description
serine/threonine kinase 39, STE20/SPS1 homolog (yeast) [Source:MGI Symbol;Acc:MGI:1858416]
Coordinates
chr2:68197043-68204264:-
Coord C1 exon
chr2:68204131-68204264
Coord A exon
chr2:68197092-68204130
Coord C2 exon
chr2:68197043-68197091
Length
7039 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
ATTTCTTATTCATCTTTCAGGCC
3' ss Score
10.48
Exon sequences
Seq C1 exon
GTGCTAATGCTGACTTTGCAAAATGACCCGCCCACTTTAGAAACTGGTGTAGAGGATAAAGAAATGATGAAAAAATACGGCAAGTCCTTCAGAAAGTTACTGTCACTGTGTCTTCAGAAAGATCCTTCCAAAAG
Seq A exon
GTATGCCACTTTTGGAGTGGGAGCGAGTGCCGGCCTTTGAGTTTCCGCAAAGCTGTGTTTGTGGATGAGAAGAACCTACATTAAGTCTGGCCTCTGTGCACCATCCTGTTAGTGGGAGGAAGCCTGAGGCTGCGGGGGGGGGTGGGGGGTGGGGAGTGGGGGTGGGGGAGAAGCCGGTGTAGCACTAGGGGGAGGGGGCAGGACTGGAGGAGGGTGAGGGGGGAAGAAGAAGCCATGGAGGTGGAGGAAGAATTGATCCTGCTTGCTTGGGGTAGGCAAGTAGGTACTGTCACCAAGAGAAAGTGACAAAGCAGATGTCAGAAGACGCTGGCAGGGGCGAGGGCAGCCGAGCTTGCAACCTGCACTAGGTAGGCTGAGCTGACCTCCCAGGACATCCGGCTAGCTCCAGTCTAAACCAGGCCAAGTTACTGAATTTTGCATGCGCTTCCTTTTAGTTGCAGAACAAGTTGTCTGTGCCATTAACAGATTAGCAGCAGATGAAAGTTTACCTAGAAAGATTAATCCTGTGAGCGGAAGCAAATGGCTTTAAATGAACTTAGTGTTTACTCTGTAGTCTTAATGTTACTGCCCTGCACGGGAACAACTGTCATTTTGAATCTGTTTCTTCCTTTTTAATCCCGGGACTTTGAAATACCCCTGGCATAGACAGTGGAACCCAGAACCCTTTATCATCTACAGGAGAGTTTTAGTGCTGCGCATCAGCGGCAAGCCTATGCCTTGTATAGATTTGGCATCTCTCTAACAGTCCTGGATAGTCTATCATACGTTCCCCAAGGTGCTGATGTTTTGCTTAGATATAATAATAATAATAATAATAATAATAATAAATAATAATATTCTGAAAGTTCCCCATTCAGGGATGGGACCCTGTTGTTATAAGGCACTGCTTTATTCCAGTCATAAATTCTTCAATGGATTAAGCTTTTAAACTTTTTTTTCTTTAAGCAGCATTACGGTCAGTTAGGCGAGACTTTAACTTACAAGCAACCTCTGTGGTATTTTGGGACTATTTGCTATTGTGAGTTTTTAATTATTTCCCACCAATAATCCGCACAGGCTGTTTGTGCCCAGTGTTTCTCCTGTCCTTCCTTCCCTTTGGTGTTTTGGGGTTAGTCTTCCTCCAGTGATCTTGCCCTGGCCTTACTTGCCACTCTCCTTTTGGTGACAATGCTCTTAGATTTTAACTTTGTTCTCCGGGTTCTGCTTATCCTTTCCTTGTTGGAGGGGCGTCATTGCCACAAGGGAAAAAAATGACGTGACAGAGAAGTGGTTGAGCCTCCCTCCTCACCTGGTTCGAGATAACCTTGCATTTCTGCTTAGTTCTCTGTCTTTACTGACAGCCTCTGGCATTCTGGAATAAGTTGAGGTTCCACCTAGTGGCTGTGACAAGTAATGCCACCCAGCTCTGAAAGTGGTTCCCCAGGGTCGACTTGCTAGTGTGATGAAGTGACAGGTTTGTGATTTAATCCAAAGAAGTTAGATTTCAGTGCAGTGTATTTAACAGACATTTAAACGGTTTGGTTTCTTGAGAAACGTAGAGACTTTTCCAGGTGTTCCACACTGTGTGAGTTCTGAATCCTGATCCCCTGTGTGTGAGACAGCTTGTCCCTCAGTGAGACAGTGAGCCAGAGAGAAGAGAGGCGGAGCTTTTGTGAGGCAGCCTCGAGTTAGGGTTGATGTGTGCAGGAAGCCTCTCCCTCCCCAGCTGTTTAGCCTGTGTGAGCAGGTGAGGCCTCCTTGCACGCAAGGTATATGCAGCTGTTCTCAGCTGGAGGAGTGACAGAGCATTAGTGCTGCACCCCCTCCCCAGAGGCTCTGCCTGTTCATGAAAAGGGAAAGACGTTGAAGATGGATGTGAGGACGAGCACAGACAAACACACAAACAGTCATCAGGATTGCGAGTGTAGAAAAAGAATTATTGTTGATATAACGTATAACTTAAAACACAGCCAGCATGAAATAAACAAATAAGCATTTATGCACATGACAAAATTTTGACATTTTGGTGATGTTTCCAGAGAACTTTTAGTCCGTCTTTTCTGTTCATGCTGTTTAAGGCTTTCTGCTTTCTCTCTCTCTTACTTTTTTCTTTCCATTCTCTTTCTGTAGTGATTCAATACCTAGCGGGATTCCGAGCTCTATTTTTTTTTCTCATTCTCATGACTTAATTTCTTTGTCTATCTAATGGGTGTAGTAATTGTCGATCAAAGGATCGTTCTGAGGATGTGGTGGAGTGACACCCGAGAGTTGCCCGCAGAGCCAGGGGTGAGCCCCAGAACTCAGGATATAGAGACTGCCTTCATCATTTGTAAGAAGAATCGCTGCCCTTTTGTTACTAATCACAGGACGCTAATGCTGTATCTTTTAAAACCACTGTTACACGATAGGCTTTTGTTGATTTATACAACAAATTCAGGCTTTTAGAAGGACACACGTTCTTCTTTATATGAGGAGACTCATGGGAGTTTGCTGTCTAGAGGTGATTTAAATCCTCTGAAGAGAGTTTCAGGAACAGCAACCAGGTTCAAGAGGGTTTAGGAGTTGCAAGAAAACTGGCAATTCTTGCGAGATTTGTGTTGCCTGCATTAGCTCTCCCTGCAGTCTTATGCAGTTGACAGGCAGCAAAGCCCTACCTAGTGCTGAGGCATGACAACCAGTGACAGCCACGGTGCAGGGATAACCAAGACATATCTCCTCCTGCACTCCCATGCTGGACTCTGCACCCTCCTCTTGACACAGAGTTGAGGTGTAGGAGCCCTGTGCCCCATAGAGGTTTGTGCTTTGCATAGCAGACTATCATTGTTATTTCCTAATAAAATGAACCTTGACCGTATAGTTTAACATACTCGTAAATGATGGCAGCCTATAGGAAGAGTGAACAATTACTTTGAGCACTGGGGGCTGGGAGGGAGCAGTGGTTACTGTTACATAGATAGATCTGTCAGAAATGAGATAGACTGGAATATTACTTTGCCTAGGGAGGGCGGGAGAGCCATGCATAGCAGTTCTGCCTGAGGTAAGTAAGGTGCTGGAGTTTATTAAAGCATGTTGTTAGAACTGTTTTGACTTTATAACACTCAATCCTGAGTCCTTTGAGATTCATTTGAGTCTCTGTGGACTTTGGCCCATCCATTTGTATTGGAGGAATCTGTTGAGGGATTTTCTTCAATGATGTAGGTACTTGAGTGCTGCATTGTTTTTACAGACTTCAGACTCAGTCATCACTCATAGCCTGGACTATTTCAGGGGCTGGTAGCATTTTTAGCATTTCTTGTAAAACAGGGTTCCCTGTTACATTACCTATGCACTGCTATGTGGTGGTTAGCAGCCACGTGAGAGGTGGGCATGAAGATCCCTTGCTCCAGTAGAACTCAGAAGGCAGGCAGGGTTACAAGCTGCACAGAGCGTTTTGTGGTTGTTTCTGTGAAGCTGAGTTCAGCAGGCAACAGGCACCTCAGCCTGCCTCACACATTCCTTCCTTCCTTCCTTCCCCTCATTTCTCCTGCTTTCCCATTCCCCTACTTTCTCATGGAGGGAGCTTGACAGATGTGTGGTTTTACTCTAAAGCTATGAACACTTGGAGCTGACTTCAGTACAAACCAGTGACCTGCTGTTGAATTGTTCTCTGTATTTGGAGTAGAGTGACCTGCAACTTAACAATTGTGCCTATTTAAAAAAAAAAGAAAGAAAGAAAGAAAAAAGAATTTTTTAAGCCATCCCTCCCTTACCTTATGGTGTCATTGTAATGAAGGGTAAGGGTGGAGTGGAGGGGGCAGAAAAAGATTTTCTCTGCAATATGCTTTCCCCCTTTATATTTTTGGTTGCCATAGAAATGACCTTTCTCAAGAAAGGAAAGAATTTTCCTAGTTCCATTTCTCAAGGTTAGTCCAGTATTCTGCAGCCTTCTCTCTACCTTAGTTTAACATTTGACCTTTGGCGTGTACTAGGGGAACGAGGGGTTACTGGGGAAAGGGAAAATCATTTTGGGTCCCCAGATAGGCACCTCCCCTCTTCCCGTTCTTTGTTTTGCTAGCCAGAGCCTTAATTTTAGTGCCTCCCCTCCCACCCCCCTCTGCTCTTCCTCACTGTGACTAGCAGATGCTTAGGCCTCAGTGCTGGCTAAACTTAGCCGCAGGAGTTACAGTCCTGCGCTCAAATGTCTACCAGCATTGCCTTCACTTCACGCTGGGGTGTGAAATTAAGCTACAGTAGCCCACTGTTCTGTGTCAGGCACTGGGAATATAAAAATGAATTCTACAGGCTCCTTTGCCTTGGAAGGGCTTGTGACATGACTAAGTGGAGCTATCATGGACAGGGATCATAGACTGAGATGAATTGAGAAGAGGAGTGGGAAAAGCCCAGCTCCCAAGCGAGCAGCAGCAGTTCCCAGCAAAGAGACCTACTCAGGCAAGGTGGGGGAGAGTGCCCAAAGAAGTTGTCTTCTGAATTGTTTCTTGACTAATGAGCAAGGTGTACTAGTTGGTTATGTGAAAAGTTTTGAGTCAAGAAAAGCACTGCCTGCGTTGTCACAATCTAACAAGGGACAGGTAAGAACCCCAACGTAGTTGAAGGCAGAATTGCACGAGGTTGACGGAGATAGACTTTGGGATCATTGAGCTTGGTTTGGTTGCTACCTCTGAGGGTAGGCAGCACAGACTGATGAGCAAGACGAATAAATATACAGCAGAATGGTAATCGATGCATTATGTAAAATGACTAAGTCCTTTCTCATCTCCAAGTTCTTTGTTTTTAAACAAGATGTAGACTCATGCATTTAATGAGTTTGCCAAGGGATATGGCCCTCCTGTTGCTTAGACCTTTATTTAATCAAAGCAGATATCAATTAGCAACTGTTTTAGTGGATGCATGACTTGGGCTTGTTTGAGAAGGATTTTATAACTAGCATTCTTGAAATTGAAAGGAAAAAGTGGTAACACTAAAAATCTGCCTTGCACAGAAATACAGATTTTGACTGTCAGACTAAGGCAGGTGCTGGCACATTTTAGCAGTAGCTGCCTATCATTCTAGGCACAAGGACACTTTCTACCCTTGTACTCTCACCCCAGTATCATTCTCTTTGTACTTTAGCTAGCCTGTGAAAATATTAATATCCCATGATGCTTTCGTCTCCCTTCCCATTTGCCATTATGAAAATTTTACAACACACAGAAAACGTGGGCAGTAGCTCAGTGTTTGCTCCAGTCCCCCGCCCCCCATTCCATCACGGTGAGCGTCCCCATCCTCTGGGTGTTCTGTTTATTTACTGAATTATTTGAAAGTAAGAGACCATGCTTCACTACGTGTTTCTTCCAAACAAGGTCATGTGCCCACGTGATCATGATGTTTTTCCTTGTGATCACGTGATCACTTCAGAAAATGAGCAGTATATATATACATACATAAATATATATATATATGTGTGTGTGTGTGTGTATGTATATATATATATATATATTTATATATATATATATATATTTTTTACAGGCTTCTTCTCTGTGGTCAACTTATGTATTTCTAAATGTCTTTTGTAATTTTTGCTGCTTCCTTTCCAAACCCAGTGTTTGATCAAGGATAATGAGCTGTGTTTGGCTTTGAATTTTATGTCTATTTTGATCTAGAATGCTTCCCTCATCTCTTCTCCCTTTTCCTCTATCATCCTGAAGATTCTCCTGCAACCTACCCTTCACCCCATACTCCTACTTCCTTCCTCTTCCTTCCCCCCCTTTCCTTCTCTTATGGTAGCAGTAGGACATAACCTGCTGGATGTTAGGTGAGTGCTGCTCCATTGACCAACATGTCTAGCCTTATCTGGATGAGCATAATTAGGGCAGCTTTTTTCCCCCTTTGTACAGACACAAATAGAGAAAGCTGATAGGAAATGGATTCCTAATTAAGGGAGTATTGACAAAGGAAGCTATTCTTTATGGACGATTGTCAGTTGAACATAGAAGGAATGCTAAAAGTAGGAAATCAATGTCCGGCTACCTCCTGTGAAATATTTAAGGCAAAAATGGTAAACCACAGGGGAAGGGTTTCAGCAACAAGATATCCATACAGCACGCCAAGACGCCACTCAGCACGACACTGGCTAATTGCTGTGGAGAAGGCAGGCCTTCCAGTGTTGAGCTTTGGAGCCTGGGGACCAAGCAGTTACACTTAGCATCAGTGTTAATGTTCTGGCCCATCGGTCGCCTCCGTGAAAGCGGAGCTTGAGAAGGACAGATCCAAACTGTGAACTTTGGAGTATTTACAAACTCAACCAGTTATGCATCTCCTATCCAAACTCCGCAATTGGGAATGTTTCTAAATGTGTAATTTTATGGGCAGTTTAGACACCGTTCATTTGCATGATGAGATGTCTTTGAGCCTTCTGGACCTGACTTTAAGTTTAAGGCACATAGAGCATAGAGAAGCAGGTCACATGATACCATAAGGAAGTAGACATATCCAGAAATGCTTGTAAGGGAATTTGTGTTTTATTGATTACCATACTATTTTAAATTTCCTTGAAAAAAAGTGGTCCATATACAGTCGAAGCAGTTGCTTTAATACTCCGCAGACTGAGCCAGCACACAACATCTGTCTGTGAGCCCTTCTCAGTAGATGCTGCTCCTTGGAAATCACAGAACAAAGTTCACTCCGTCATTCCTTTGACAAGGTCACATTGCAGTTTGTATGGCTTCTTAATAACATAGGAATTTAGCTCCCAGCAGTTGCTCTGCCAACTTCCAGAAACGCCAAAGTTGACATACTGAAGTATACGAATGGAGGCTGGGAAATTGATTGTGCCCAAACCTTAACTCACATGAGTTTATGTGTTTGGCAGTAGAGGAATTTGGAAAGAACTAGAAAACCGACATTGCTTTATTCGGTGCCAGCTTGTGACTAGCTTGCTTGTTGGCTTTGCTTGCCCTAAGAGCAGTCATCCAAAAATGCTCTAAGGTTAAGCTGTAGTGTCAAGGAAGTCTATTTATTATGTAGCAATTGTTTCAACTCTGATTTCTTATTCATCTTTCAG
Seq C2 exon
GCCCACAGCAGCAGAACTTTTAAAATGCAAGTTCTTCCAGAAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027030-Stk39:NM_016866:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.0=100)
A:
NA
C2:
PF0006920=Pkinase=PD(4.4=70.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: