GgaINT0048477 @ galGal4
Intron Retention
Gene
ENSGALG00000010930 | STK39
Description
serine threonine kinase 39 [Source:HGNC Symbol;Acc:HGNC:17717]
Coordinates
chr7:18609471-18612750:+
Coord C1 exon
chr7:18609471-18609604
Coord A exon
chr7:18609605-18612701
Coord C2 exon
chr7:18612702-18612750
Length
3097 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
ATTTATTATTGATCTTTCAGGCC
3' ss Score
8.5
Exon sequences
Seq C1 exon
GTGTTAATGCTGACGCTGCAAAATGACCCTCCCACTTTAGAAACTGGTGTAGAAGACAAGGAGATGATGAAAAAGTACGGCAAATCCTTTAGAAAATTAATTTCTTTATGCCTTCAAAAAGATCCTTCCAAAAG
Seq A exon
GTAGGTCTTTATTGCCATGTACGGTTTAACTATTTTAAGTATAGAGACTATTTACAGTTTTGGTATTTAAATATCATTGCCCTTCAGTGTATGGTTTGGATTTTGCAAATATCGGCTGTCAATATCTTCATCTAGGGAGAAGATATCTTCTTTGAAGTGTCACTTAAGTTTTCTTCTGAGTTGTTAACCTCATTTGCTTATATTTAAATATCCTGTTCTGATCAAACAGTCCATGCTCTATACCTTCTTTATTGCAGGCAAGATAAACATCTTGATATTATCCATAAATCTAACAAGACTGTTCAGGTTGTTCAGACAAAACTATTGGTAACTAAACATGATCTCTTGGCCTCTAAAAATTAGAAAAAGAAAGTACTAAATTACTAAGCTCAGTATTACCTCTAACTTAAATGTCTTCATAGAAAATTATTTATTAAGAAATATTTTTGTAACCTGAGATGGGATGCTCCTAGCTTGTTTGGAGTTTCTAAAGTTACTGTAGGCTATTTTCTTTACTGTTTTTTTCTTTATTTGATGAATGGGGTAGCCAAGATAATGGAAATGTTAAGCATCTATTTAAAAACTATTGCTCAGGTTCCAGGTTCCCAGTGCAAATCATTTATTTATCCTTTATTTGTTTTTATGCAGACCCATATTTGTAGGCCTCTTTGTGGAAGAGGTGGAGAAGGCAGATTCTAAATAACATTATTTCCAGAGAATGTTCAGTGTATCACTTTAAAAACTTTCAGATCTGACGTTTCTGGGGAAAAAAGAGATAGGTCTGAGGAGATTGATGATTGAGTGGGCGTGTAGGTCTTTGCTGGTGTTCCACTGGCATTAAGCCCAGGGTATGTAGTGGTCAAGTTGAAAAATGGCAGCAGCAATATTAGAAAATACATTTAATGAAGAAAAGGAATGAAAGTTGCATAGCACCATCCTTATTCTTGAAATCTTCCAAATTCAGCTTTGTCTGAGAAGTCTTTGCCATGTCCTTTACAACTGATGGTCTTATTAACAAATCTTAATGCTTGAAGCTTTTCACTGCTACTTGCTGGCCGTTTATAGACAGGAATGAAATCTTCTGGATAATTGAGGATAATCTTTTGTCTCTAGAAGTTCTGGATGCCCCCACCCTGGACATGTTCAAGGTCATATGCAACTTGACCTAATGGAAAGCATCTCTGCCTATGGCAGCAGAATTGGAGTAGATCTTGAAACCCTTCACACCCAAATAATTCTGTCATTCTATTCTGTGAAGTTTCTTTTAAGTTTCCAGTGTCCAGTAATTTTCAGAGAAAGGTTAAATTGGTATGAAAACATAATTAAAAATCTTTCTTTCTTTCCTTGCAGACATAATGCCTGGAGTTATCTGACGTCAGTGTTCAAACATTAGCGTTATCATGCATGTAGTATTTTCATACTCAAGTTTGATCTGAACTGAACAGTTAGCTTATCACATATGGGTGATGAGCTCTATGTGCCAATTATTCTTCACATGACAGTGAGCATTCCTGTGCTATAGGGTCATTGCTACTTTTTTTTCTTCGTAGTCTGGAGTTAATTTGGCAGAGATACTTCAGTAGTTATGTCAGTTGTGGAATCTAGCTTTTAACTGCATGTATTCCTGATAATGAGATATGATGGTTCTGGATCACTAAACTTACCCTAAGATTTGAAGTTGATTTAAGGCAGAACTTTCAAAATTTGACATAGAAACTGATTCTTAAAAGGCTCTCCTTCATTTTATCCATCCAAGGGCTATATGTGAATTACAAGTAAGGATGGCGGTCAACACATTGTCACTACTAAGAACTCCTTTATTTTAGAGTCAGGTACTTCGGTGTGGAAGCAGAATAAGTTCTTGTGGAACTACTGTCAGTGTCTACATTGGATGCTTATTGTTGATGACCCAAGTAGTTTCACTATTTCTAGCAGGAGTGAACAGATCTATGTACTATTCCTGTTTTCTTCACATCCTTATCGGATGTGACCTCAGAGAAATAAAGCAGTTCAGATTTTTCTTTCTTGATGTCAGAACATTCTATAGGAAAGCTCTCCCCCCGTCTTATCTAATCTGATCTGTATCCACTGTCTTGCCGTAGTTCAAATGAAAAACTATAGCGAATATTGCTTCTGTTTGTTTGGAAATTATGAATCTTAGAGATTCCAGCTTACCTAAACCCAAAAATTGGTAGGGGTCTCTGTTCCTAGTAGTATTAAAGCAAACAAACAAACAAAAGCAACAAGTAAGCCACATCTGGTGGTTTTTAGGTCATCCCAAGAGCTCTTCTTTTCTCTCTTCAGCACCATATTACAGTTTTGTCTGGGTTTGTAGCTTTAAATCCTTGAGGCTAGGGGGAAGTAAATCCTTTTATTGGAATAATAATTTCAGTAGCTGAAAGATTCTGAAAATCTGTTGGAAACATCAGAAATATAAACTTGAAGATGATGAGAAGAATCATAGAATGGCCTGGGTTGAAAAGGACCTCAAAGATCATCTAGTTTCAACCCAACGGACTTGAACAGAACTACAAATAAAGTTGAAACATCTGGGTTTTAACCATACAGCAGTTGATTTGATGTTTGTTGAGTTCTAAAATGTTCCTGATAACTTTCTGGTTTATGCAGCATGTTAATAGCGTCAGTACAGTTAATACCTGTTTGCATCACAGAAATAAAATACTTCAATTAATAGGTATTGATGCTACTGTCTAGAAAATACAATCATCCTTTCATTGTTGTGGAGCAAAGTTCAGTTACGTTTATGGAGACACTTCAGGAAGCACATTGCCTGACTTTTTTTCTAACTTTCTTTGTTTTAAGGGTAAAATGCATTTCTGTTTAAAGAAAAAAGGCAAAAATTGGCAACTTAGGTACTGATTTTTTTTTTTGGTATCTTTACCATAGGGAAACTTAATTTTTTCATGTGTGGTAAGTAAGTATGTGTGAATTAGTTTAGTAGCTATTGCCATTCATTTCCCCATTCATACAGTACTAATTAAAAAATATTAGAGACGTACTATTTAACTAACGCCCTGTACTGTATTCACTGAGAGGGGTCTTTGTTTCCTGTTCTAATTTATTATTGATCTTTCAG
Seq C2 exon
GCCCACAGCAGCAGAACTTTTAAAATGCAAATTTTTCCAGAAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010930:ENSGALT00000017779:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.1=100)
A:
NA
C2:
PF0006920=Pkinase=PD(4.4=70.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]