GgaINT0048541 @ galGal3
Intron Retention
Gene
ENSGALG00000012574 | WSDU1_CHICK
Description
NA
Coordinates
chr7:38167695-38169376:-
Coord C1 exon
chr7:38169236-38169376
Coord A exon
chr7:38167894-38169235
Coord C2 exon
chr7:38167695-38167893
Length
1342 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TGATGATGGTTTCTTTGCAGATG
3' ss Score
9.36
Exon sequences
Seq C1 exon
AGTCTCTTGGCCTGCGCAGTAAAATCCTCCAGAAGATCGAAGAGCTGAGGATGAAAATGGTCTCTGTTTCTGTTGCTGTTCCTGATGAATTCTTATGCCCTATAACACGGGAGCTCATGAAGGATCCTGTCATTGCAGCAG
Seq A exon
GTATGACTTTGAGCAATGTTGAATAACGTGAATGTCTTAAGGGTAAAGATGGATATGGGAACACAAAAATTGGGCATATCTGTCTACAATGAATAAGATAAATTAGTCTATGTAGCTATTGCAAGGAAACAACTGTGGGAAATCTTTGGCCAAACTGCATCTGTGAGAGAAAAATGCAGCATCATGTAATTCCTTTAGTATCAGCTTTACTGACAAAACCATATAGGTTATTTTTTAATGCTCTTTTCTTTTTGTGCCTTTGCAAGTATAAATTTAAATCCTAATTATTAGAGTTGTCTCTGTAAATACACAATGGAATTGTGCATGAGGGAAACAACAGCAAAAACACAGGCTCATTACTAACTTTACACAACTGTATATATGGCACTTAAAAGGTTGTACAGAAGGTCAAATATCCCACCAGTTTTGTGGCTTTGTTCCTCTCTTTTAATGCTTTAAGAAGAAAAATTGCAATTAGAATGTTTTGTTACTTATATAATTACAATACTGTATGTTTTTCAAGGGCTGCTCCAAAAGCAGCACCTCCTGTTTTGTTTTGTTGGTCCATAACGTAACAGGCAGATGTTGGTGGGATGGCAGTAGAGGTTGAACCTTCCTACCAATATTCCATTATGTGTTGTTGCCGTGACAGATGGCAGCAGAGTGGGAGTCTGATCAAATGGTGTCTGACATGGAAGTGCAGATGAAACAAAGCTGTCACTGAATTCCTTCAGGTGAAAAAAAATGACACCCCTGACATTCATCAACACTTGCTGGAAGTTTATGAAGCCCATACAGTGTTTGTGAGCACAGGGAGGCAGTGGGTGGTGCGTTTCAGCTGTGGTGACTGGGTCACCTTGGCTGGCACAGATTTTTATAAGCATGGCATGCAGGCTCTTGTGCAGTACTGGTGAAAATGCATAGCTAAAGGTGGTGACTATGTTGAAAATCAAGTAGTGCTATTGTGCTCTTAATAGCTGTTGTAGTTCGCATTGAAATAAGGAGGCATTACTTTTGGAGCAACTTACTAATGTATACATGGCCCACAACAGTTCTTACTAAATCAAGCCCAGGCAAGTCAAAGGTTGGTTCAAAAGAGACTGAACAATTTCATGTGTCCTGTGTCATCTCCACTCCATTATTTACTGCAGGAACTGAATTTTGATCTCAATACTGCTGTATAAACTGTTACTGTAATAGACTCAACTACATAATTTTTCTACATCTCAATTCTCTTATTTAGAAATACTGATTCCCTTCTATCTCTTACATATGTAAAATATATAGTGTAACAGTGCCCCATTGTCTGTAATGCAAGATTTTGATGATGGTTTCTTTGCAG
Seq C2 exon
ATGGGTATTCCTATGAAAAGGAGGCAATGGAAAATTGGATCAGCAATAACAGACGATCTAGTCCCATGACAAATCTTCCTCTTCCCAGTCTTGTGCTTACACCCAACAGGACACTGAAAATGGCTATCAGCCGCTGGCTGGAGACTCAGCAGAAACAAGGCGAAACCACTTTGCTTTGAACTTGTTCACTAAAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012574:ENSGALT00000020533:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTGGCCTGCGCAGTAAAA
R:
TGAACAAGTTCAAAGCAAAGTGGT
Band lengths:
326-1668
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]