RnoINT0165475 @ rn6
Intron Retention
Gene
ENSRNOG00000005990 | Wdsub1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:RGD Symbol;Acc:1359296]
Coordinates
chr3:45925008-45930781:-
Coord C1 exon
chr3:45930641-45930781
Coord A exon
chr3:45925564-45930640
Coord C2 exon
chr3:45925008-45925563
Length
5077 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
AGGCAATGTACTCTTTTCAGATG
3' ss Score
6.01
Exon sequences
Seq C1 exon
AGTCTCTAGGTCTGCGCAGCAAAGTCCTGCGGAGTATTGATGAGCTCAGGACCAGGATGGAGTCCCTTTCTTCCGGAATCCCTGACGAGTTCATCTGCCCAATAACCAGGGAACTTATGAAGGACCCCGTCATCGCATCAG
Seq A exon
GTGTGTGTGGGGACTGCGGGGCTCGGGTGTGTGACGGGCTGCCCGGAGGACAGAGGAACACTTCTCACATGCTTGTTGTAGCTGGGCCGTGTTCAGGATTCCCATTTTGTTTCTCTTAAGTGGGGTATATTTTGTAGTAAACAAACTGGGGACATTACATTTGGAATTGAGACAAAGTGATTGAGTTTGAAGTTTCACTTAAGCCCATGTGGCTATCATACTGCGTGAGTTGTGTGTCTGTGTGCATGGGCAGGCGTGTGTGCACACTTAGAGGCTGACATTGGGTGTCTTTCTCTATCACTGTCTGCCTTACTCCCTTTTTCCCCTCAGTGGAAGCCTGAAACGTGCAGATGCTTCTAACTGATGTATCTTGTTTTATATCAGTAATTATTTCTTTTTACCACAGTAGTGTTCATTGCACTGGACATACCACAATCCATCTGTCCACTAGCTGGCCATGGACTGTCATGTCTGAAGCTGCCGTGACATTCATACACAGCTCTTTGTCTGGGCAGGACCCATTTCCTCAGGAGAAGATATTTAGCAGTGGAACTTGTAGGTCGTTTACTAAGTGCGTGTTAAAACTGCCCAAATGTTTCTCAAGGTGAATACAGCATTTTAAGTTAATAACTACGAATTCCAGTTTCTGCCCATATTCCCAAACACATGGTGTTGTGGCTGTTCTAATCCTGGGTCACATGATGCTGTTAAACCTCTCCCTGCAATGAAGCATCTTTCATAATACCCCCTCTGGCCCCTCTTTCATCGTGTATTGAGCGATCAGTTTGACATTTTAAGTGTGTCTGCTGTGAGGCAGTGCATTGTCTGTATTTTCTCCATGGCCTCTTTGGAAAAAGATATTTGATTTTGGTGGAGACCACTGTACCGTTTTTACGTTGATTCATCATTTTTGAATCTTAAGAATCTACAATAGCAGATGTGACTGCTTTGCCTCTTGTCAGAAGTCCTGACACAGGGGAACCGTACTCCAGTTGAGTTAAAATTCACTGGATGGGTTGATGCGTGTTGCTTCGAGGCATTGATATGATGTGCGTGTGTTCTCTTTGTTCAGGGCCCACTCTTCTGGACTGGCATTTCTGTAGGAAAATATCAGCTGTGTCATTCTCTTCCTCTTAAACCTTTCTAGAACCTTCATAGCCTGCTCTACTAACACTGTTACCTTCCCACTGAGACCGCGCTCAAAACTCCAGTTACTGAGCCATTTCCCTGCACTGCTCTTAGCATGCAGAGTAGCAGTGTATACTCCGGAGCCAGGCCGCCTGGGTTTACAGCTCAGCACCGTTATCTATACCTGTGTGACCTTGGAACGGCTTCTTGACTGAAATCGAGATAAGCATGTGATATAAGCTGAATATAAGTCATAGTTCCTATCTAATGAGGTACTATTAACTGTATGTACACTGAGTAGTACATACTCGTTGTTTAGAAAGATGTCAAGAGGTTGAAATCTTTAATTTCTCAGTGTTAACCCTGCAGGACAGCTATCTCTCTTAAAAATACCTTCGTTCAAGGCACAATGGAACGAGAAAGTTTTTGGTATACTTAATTTGCTTTCTCTCTAGAAATTAAAGTCTAGAAGTGGGAAGGTTTGAACTAGCACATTGGGACTAGGGTTGGCCAAGCCTGGTGACCTCAGTTTGACCTCTAGAGGTCACCTCATGGTGAAAAGACAAGATCACTCCTACAAGGTGTCCTCTGACCACACACTGTACTCCCATACACAAAGTGAATGCAATAGAAACTAGAAGGGGAAAAAACAAGAAACTAGAAGGGAATTGACCCATTGGAAGACTCCAGGAGCCGCTATGGATGACTGTGGTCATACATGAACTCCCATCAAAGGTCAGAGGACAGCTCTGGTTTGGGTCCCCACCTTTCACCTTGCTTTAGACAGAGTCTTTGTTCCTCAATTCTGTTGAAGATGACCAAGCTCCTGTGGCCTTGCTTGTCTCCGTCTGTGTCACAGTAGAACAGCCCTGCCTACCACCTAGTTCTATTACATGGGATCTTGGGACCCAAGCTTGGGGCTCCATGCTTGCACACCACGTGCTTCACCCAGTGGGCCATCTCCTCAGGATCTCTCCAGGAACTTTTTCTTTTAGCATTTTTCTTCATTCTGTGGAAAGTTTGGAGTTCCTAGGTCAGGGCTAGCATCTCAGTGGTAGAGCACTTGCACGTCAGGCCTGCGGGTAAGACCTTCAAACTCATACACACATGAAGCATGAAACTTTGACATGCAGTGAAAACAAGCAAACAAGAGAAAGAAGTGTTTCCTGGTGACCTGTTGGAGCTCAGTTCCCTGACTACCATTAAAGTTTACTCATGCAAACCTAAGTGGGAACTCACCAGCTGCCCTGTTCTTAGTTGTCCGTTTGCAGGGATTTGAGGTGGTGGTGAATGGTGTGAAAGCTCTGGTGGTCCTGTGAGCCTGGGAATTCTGTTTGGGGATGAACTTTGGTAGGACAGCTTGAAGCGTCTGGTGTATGAGTGTGTACATGTTGGCATTTGTGGATACATGTGTGTGTGTGCGTGTTGGCATTTGTGAGTACATGTGTATATGCGGGTGAGAAGAAGATGACGTTTTCCTCAACCTCTTAAACAGAAGCAGGGTCTTCCACCAGAGTAGAGGCTATGAAAAACTTATTACATATTTGGAAAAAATATGTAATAAATATGTGGTACAGGACAAAGAAGATTATTAGCTAGGTTATGGTTTATTTATATTACAAATAGGATCCAAATGGACACTATCTTATAATGCCCTTATTAAAAAAAATAGTGTAACTAATAGGTCAAAAGAAATTCCTAAAGACAGTTTCTATAATGAAAGAATTTGTGATCTACAGAAATAAAAGGGAAAAAAGAAAAAGCACAATCCCCCTGCAATCTGAAACAGGATAGTTGCAGCCACACAAGGGGTCGCATACTCCTTGTCTGAAGATCTATAACCCAGATCCCAGGAAGACATAAGAATACTGTTAAGTGGACTGGAGAGATGGCTCAGCACTTGAGAGTACTGACTGCTCTTTCAGAGGACGGGGGTTCAAATCCCAGCAACCACATGGCCGCTCACAACTGTCTAAGTCCATGATCTGACACCTTCACACAGACTCCAATGCAGGCAAAACACCAATGCTCATAAAATGAGAATAATCTTTTTAAATGTGTAATACCACAGACCTGGCCTCTCTGTAAGCGTGGCCACCACGGGTGCCAATAGCAGCTTCCGTAACGGAGCAGCGCCATACAGTGGGAAGAGGTCACGGTAATAGTTACTCGCACCTCTGACTAAAACTGGAGCAGGCAGAGGGACGCGAGGAACAGAGCAAAGTTTAAGCTTCCGTCTGAATGCAAAACATCCAGAGACATTAATTCCGTGTAAGCACAACCACAGTGTTGACAGGAGTTTTTAAGGGCCCTTACCTCTGTACACTTAGCACACTTACCCATCTGGCCTGCTGGCTCTGGGATTAGTCAGCCCGGCTCTAACGGCAGGGCTGAGTAACGCTGAACCGCACGTGCGTTTTCAGTATTCATCGTCGTGGGAATGAGAGTTCAACAAATGCAGCTTTAACAGTAAAATGGAGGCTTTTCTTGCTCAAACTGTTGTTGTAATTCAGCATCTGATTAGAAATGGGCAGGGTGGCCCATGCCTGGAATTCCAGCCATGGAGAGGCAGGACTCCTGCGAGTTTGAAGTCAGTCTGGGCTACATAGTGAAATCATGTCCTTTAAGAAAAAATTGGCAGCTAGCAAATGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAAAAAAAAAAAAAAAAAAAAGAAAGAAAAAAATTGGCAGATAGTTCGAATAGGCCGTTTTACAACAGGGCAGCACGCACAGTATCATGCTCACTAGGGAAATAAAGTCAAAGCCACACAGCAGTTGTATTAACTGATGGCTTAGTCTCAAAACGTTGGGGAAAACAGAAAAACTATCAAAACGTTGGGAAATCCACACTGGCAAAAAGGACAAAAAGTGGAATCTTTTTTTCGAGGGGGTGGGGGTGGGAATGTAAAACGGTCTGGCTATTGTTGAAACAAACTAGGCATTTCCCCCAAAACATACAACATAGTTTTTTGGTGTGTATCCAGGTTCACAGGGGAAGCAGGGCACACACAGCAGCAGCGAGAATTCCCTCAGGCTGGAAACCGTCCAGATTTGCCTCTGTCAGTAGAAGGGATACAGGAGATGTGCAGCTGTACAACAGAATGCCAGCAGCCATAGAGTTAAGAGCAGACACAAGTGGAATCACAGCTGAAGTGCACACCACGGTGCACACACAGCTTGTGGTGCACCGCTCCTATCACTCGCACGGTCGGGGCGGGAGGAGGGCGAGGCCCAGGCTCGATTTGCAGCCGTTTCAAGTGTTGTGGATTTAGCACAGAGAGAAGCAGGCCTCGCAGCTGCCTGAGAACAGGACAAGTTCAGCAGTGAACGTGCAGAGGCTCCAAGGTCACACGCACCCAGACTGGCTTCCCCTCCCTAAGGCTGGGCTTACAGGTTTGTGTCCTTTGTCCTCCCCAGAGACCCCAGGCTTCACATGTAGGAAGGCAATCAGCCTGTAGGAGCATGGCATAAAAATGGCAGTGATTTATTTCCTCCGTGACGCGTCTTTCTTGTGCCATTTGTGTACATTGAAGGGTTTCGCCAAGTTCTTCCTAAGGCTCTTTTCTTCCCTTTCACCACAATCTTCACAACCCACTTCCCTACCTCCTCCCACCCCCTTTCAGTCCCAGTGCCCGAATGTCACCAGGGTTCTGGTCTCAGCTGCTGTGTTTCAGAGGAACAAGGTAAGTATTATAGTGGCACTGATCGGACTAGCACTTGACAGAGCACAGTCCGAGCTTAGCATGCACGCCTTCAAGGCTACGGGCCAGCCGCTGTGGCCGGCATGTCTTGGACCCAGTGCAGGCAAAGCGAGATGAGCATTTAATTCACAGCAGCCCCCTGCCTTGAGTGCGGTTCATCTGACTAACCCTAATCGCTGCTTTACCTGACCGAGGCAATGTACTCTTTTCAG
Seq C2 exon
ATGGCTACTCCTACGAGAGAGAAGCAATGGAGAGTTGGATCCACAAGAAGAAGCGCACGAGCCCCATGACAAACTTGGCTCTTCCTTCACTGGTACTGACCCCAAACAGGACTCTGAAAATGGCCATCAATCGATGGCTAGAGACGCATCAGAAGTGAACCTGCCCACAGGCATCGGGTACACTGTCAGTGATGCCCTTCAGATGATTCAAAATGCTAAGCAGCCATTACAGAAGCAAATAAAAGGGAAGGACAGACGTTAAATCCAGTTACTTTTAAAAACTGTAAACTGTAAGCAGGTAAGTGGTGGCGCACACCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGTGGGTCTCCATGAATTCCAGGCCAGCCTGGTCTATAGGGCGAGTTCCAGGACGGCAAGGCTACACAGAGAAACCCTGTCTCAAAAACCTAAAAGCAAAAAAAAAAAAAAAAAAAAAAGTCATTATCCTTAAAACACAGAATTATATATCTAATGTTGTTGCTATTTCTGTAAAGGTGAAAATATTTTTGCAATAATGAGAAAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005990:ENSRNOT00000008168:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764712=SAM_2=PD(24.2=33.3),PF0456410=U-box=PU(28.8=43.8)
A:
NA
C2:
PF0456410=U-box=PD(69.9=96.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]