MmuINT1035174 @ mm10
Intron Retention
Gene
ENSMUSG00000026988 | Wdsub1
Description
WD repeat, SAM and U-box domain containing 1 [Source:MGI Symbol;Acc:MGI:1919387]
Coordinates
chr2:59852364-59858750:-
Coord C1 exon
chr2:59858610-59858750
Coord A exon
chr2:59852962-59858609
Coord C2 exon
chr2:59852364-59852961
Length
5648 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
AAGCCATGTGCTTTTTGCAGATG
3' ss Score
7.54
Exon sequences
Seq C1 exon
AATCTCTAGGGCTGCGCAGCAAAGTCCTGAGGAGTATTGAAGAGCTCAGGGCCAAGATGGATTCCCTCTCTTCCGGAATCCCTGACGAGTTCATCTGCCCAATAACCAGAGAACTCATGAAGGACCCCGTCATCGCATCAG
Seq A exon
GTATGTGTGCGCGCTGTGGGGCTCAGCGTGTGACGTGCTCCCCGGAGGGCAGGAGAGCACTTCTCATAAGCTTGCTGTGACTGGGCCGTGTTCAGGACTCCCATTTTGTTTCTACTAAGTGGGTTTCTTTCTCCTTTTTATAAGAAAAATCATTAAATCCAAAAAAATAGCACACTATATATTTTGTAGTAAATAAACTGGGCATAGTAAGTTTGGAATCGAGACAAAGTGATTGAGTTTCAAAATCTCACGGAAGTTCATGTGGCTATCAGCCACAAAGACTGTATGGATTGTGTGTTCGTGTGCATGCGCACATAGAGGCGCTGGGTATCTTTCTCTGTCACCATCTGCTTTACTCCCATAATTCCCTCAGTAGAAGCCTAAAATTTGCAGATGCTTCTAATTTTTTTTTTATTTTTATTATTTTGGTTTTTTGGGACAGGGTTTCTCTGTGTAGTCCTGGCTATCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGAATTAAAGGCGTGCACCACCACTGCCGGGCACAGATGCTTCTAATTGATGTTATCTTGTTTTACATCAGTAAATGATCTCTTTTTTATTGCTGAGTAGTGTTCCATTGCACTAGATACACTATCTCCACTAGCTGGCAATGAATGGGCTGTCATGTCTGAAGCTGCTGTGACATTCATGCAGAGGTCTCTTTGTCTGGACAGGACTCATTTTCTCACAATAAAATACTTAGCAGTGGGGCTTGTAGGTGGTTTACTAAGTGCATGTTAAAACTGCCCAAATGTTTCTCTAGGGGGAAGCCACCATTTTAAGTTCATAACGGAGAATTCCAGTTTCTGCCCATATTTGCATGGTGGTGTTGGTTGTTCTAATCCTGAATCACATTGTACTATTAGTCCTCTCCCTGCGATGAAGCATCTTTTCATATGCCTCCTAGTACATCTTTCATAATATGCCCTCTAGCCCTTTTTTCATTTTGTGTTGTCAGTTTGATATTCTAGGTGAATATGAATGCATTGCCTGTATTTTCTCTATGGCATCTTTGGGAAAAACAATGTTTGATTTCGACGGAGTCCACTGCATCATTTTCACATTTATCGATCATTTCGTAATTCTTAGAATCCACCATCGCAGGTCTGACTGCTTGGCTTGTGGTCTGAAGGCCTGACAATGGGGAGTCAGACTCCGGTTGAGTTCCCTGAATGCATTGCTGTGTGTTGTTTCAAGGCATTGATATGGCATGTATTTGTTCTCTTGTTCAGGGCACACTCTCTTCCCGACTGGCATTTCTGTAGGAAAATGTCAGCTATACTGTTCTTTTCCACCTTTCCTCTTAAACCTTTCTAGACAACCTTCGCAGCCTGGTCTGCTGACGCGTTACCTTCCCACTGAGACCGTGCTCACAACTTGAGTTGTTGAGTCATTTCTGGACATTGATTGCTCTTAGCATGCAGAATATCAGTGTACACGCTGGAGCCAGGCTGCCTGGTTTTACATCTCAGTTCTATTATCTATACCTGTGTGACCTTTGAAAGTCTTCTCGATTGAAATCAAGATAAGCTTGTGATAGAGGTGGAATAGAAGTTGTAGTTCCTTTATAATGAAATAGTAGTAACTGTATACTGAGTAGTAAACATTTATGGTACTTCATGGACTCTTTTTTGTTTGTTTGTTTGTTTTTTTGGTTTTTCGAGACAGGTTTTTCTCTGCATAGCCCTAGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAGATCTGCCTGCCTCTGCCTCCCGAGTCCTGGGATTAAAGGCGTGCACCACCACACCCGGCTCATGGACTCATTATTTAGAAAGATGTTAAGAGGTTGAACTTCTTAACATCTTCTGTGACTTCTCAGTGTTAACCCTGCAGGGCGGCTACCCATCTTAAAGATATCTTCATTCAATACATAATGGAGCAAGAAAGTTTTAGTATACTTAATTTGCTTTCTCTCTAGAAATTAAAGTCTAGAAATGGGAACTAGCACATTGGGACTAGGGCTGGCCAAGCCTGGTGACCTCAGTTTGACCTCTAGAGCATGTGCAGTGAAAAGATAAGGTCACTCCTACAAGTTGTCCTCTGACCACTACACGCACTCTACTTCCATACAAACTAAATACAATAGAAGCTAGAAGGGACTCGGCCTGCTGTCAGTGAATGTGGTTGTCCATGAACTCCATCAAAGGTCAGGACAGCTCGGGTTTTGGTCCTCACCTTTCACCTTGCTTGAGACAGGGTCTTTGTTCCTCAACTCTGTGGAGGATGCCCAGGCTCTGTGGATTCTCCTGCCTCCTCCTGTCTCACTGTAGGAGAACAGCCCTGCCCTACCACCTGGCTCTCTCTACATGAGTTCTTGGGACCCAGACTTGGAGCTTCATGCTTGCACATCACATACTTTACCCACTGGGCCATCTTCCCAGGATCTCTCTAGGAACTTTTCTTCATTCTGTGTGAAGTCTGCAGTCCTTACGTCTGGGCTGGGAATGTATCTCAGTGGTAGGGCACTTGGTAGTTTGTATCAGGCCTGCTGGGTAAGACCCTCAAACCCATGCACACATGAACCATAAAGCTCTAACATAAAGTGAAAACAAGCAAACAAGAAAAAGTAGTTCTTCCTGGTGACCTGTTTGAGCTCAGTTACCTAACTATCGTTGGATTTTACTTATGCAAATCTGAGTGAAAAGTCAGCATCCACACCTGCTCTCAGTTGTCTGTCTTCAGGGATTTGAGATGTTCTGAGGCAGCGTAGACTGTTTGAAAGCTCTGGTGGTCCTCTTAACCTGGGAGCTCTGTTTTGGGATGAACTTTGGTAGGACAGCTTGAACCATCTGGTGTGAGGATGTGTGCATGCATGTGAGACTAGAAGATGACGTTTTCCTCATAAACAGAAGCAGGGTCTTCCACTGCAGTAGAGGATATGAGAAGCTTACTGATTAAGAAAAAAATATGTAAAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCAGGAGGTAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAACCAAAAATGAATAAATTAAAAAATATATATATACATATGTATATATAATAAATATGTGGTACAGGAGAAAGAAGATTATTAGCTAGGTTATGATTTATTTATATTATAAATAGGTTCCAAATGGACACTATCTTATAATGCCCTCTTTTTTTTTTTTTTTTAAATAGGGTAACTAGCAGGTCAAAAGAAATTCCTAGAAACAATTTCTATAATGAAAGAATTTGTGATCCACAGAAATAAAAGAAAGAAAAAAAAAGCTTACAGCATAGTCCACCTGCAATCTGAAACAGGACAGCTAAAACAAGGGTCTCATAATCCAGATCTCAGGAAGACATAAGAATATTGCTAAGTGCACTGGAAAGATGGCTCATCCAGTAAAGAGTACTGACTGCTCTTTCAGAGGACTGGGGTTCAAATCCCAGCACCTACATACAGCTCACAACTGTCTGTAACTCTAAGATCTGACATCTTCACCCAGACACGAGTGCAGGCAAAACACCAGTGCACATATAATGAATTTTTTTTTTTTAAGAAAGAGAATATTGTTGAATACCACAGACCTTGCCTCTCTGTGAGCGTGGTCATCATGGTTGCCAACAGCAGCTTCCATAACGAAGAAGCTCTGTACCCTGGGAAGAGAAGTCACTGTAACAGTTAGTCACACCTCTGACTAAAACTGTAGCAGGCAGAAGAACACGAGGGACAGAGCAATCAGAAAGTTTAAGTTTCAGTCTGAATGCACAGCATCCAAGATATTCATTCTGCGTAGGTACAACCACGGTGGTTGACAGGAGTTTTGAAAGGTCCTTTACCTCTGCTAAAATACACTTAACCCACTTATCCATCTGGCCTGCCAGCTCTGGAATTAGCCACCCTGGCTCTCACAGCAGGGCTCCGAGTAAGGCTGAACTGCACATGTTTTGTCGGTCTTCAGTCGTGGGAAGGACGGAGCGCTAGCTCAGCAAATGCAGTTTCAACCATAAAATGGAGGTTTTCTGGCTCACACTGTTGTTATAACTCAACAGGGTGCCGCATGCCTGTAATTACAGTAGTGGAGAGGCAGGAGGATTGCTATGAGTTTGAGGTTAGCCTGGGCTACATAGTGAAATCATGTCCTTCAAGGGAAAAGAGAAAAAAAAAAAGGAAATAGTTGGAATAAGCCTTTTTACAACAGAGCAGTAGGCACAGTATCATGGCTACTAGTGAAATGGAAGTCAAAACCTCATGGCAATTGTATTAACTGATGGCTTACTCTCAAAAAGCTGGGGAAAAGAATGAATTATCAAAAAGTTGGGAAATAGCTGGGCAGTGGTGGCGCATGCCTTTAATCCCGACACTTGGGAAGCAGAGGCAGGCAGATTTCTGAATTTGAGGAGGCCAGCCTGGTCTACAGAGTGAATTCTAGGACAGCCAGGGCTACACCGAGAAACCCTGTCCCAAACAAACAAACAAACAAACAAACAAAAGGGACAGAAAAGTCTGGCTGTTATTGAAACAAACTTGGCATTTCCCCCAAAACATACAACGTAGATCTTTGGTGTGTGCTCAGGTTCACCAGGGGAGCTGGGCACAGACCCCAGCAGCGAGAATACCCAATACTGGAAACAGTCCAGATTTGCTTCTGTCAACAGAAGAGATCCGTCAGATGCACAGCTCTACAGCAGAATGCTACTAGCCATACAGTGTTAAGAGGGGACACAAGTGGAACCACAGCTGAAGTGCACACCACGGCGCACGGCTTGTAACGCACGCATGAACAGGCAGGGGGATGCCAAGGCCCTGGCATGATATGCAGCAAGTGCCGGTGTGCATTTAGTACAGAGAGAAACAAGCCTTCAGCCTGAGTAAAAACAGCACAAGCTTAGCAGCGAAGGCACTAGCACAGAAACCCCAAGGTCACAGGTACCCTGACTGGCCTCCCCTCCTGAGGGCTGGGCTTATAGGTTGGTGCCCCTTTGCTCACCTTCAGAGACCCCAGACTTCACATGTGTGAAGGCAAACGACTCAGCACAGTGTGGCATAAAAAATGATGGTGCTTTAGTTCTTCGGTGCCACATCTCTTCCTGCTGTCTTTCTTGTGCCGTTTGATACATTCATTGAAGGGTCTTGCCGAGTTATTCCTAAGGCTCTTTTCTCCTCTCATTTCCACCAAAATTTCACAAAATCTTCACAACCCGCTAACCCCCTTTTCAACCACAGTGTCTGAATTTCACCAGGGTTCTGGTGTCAGCCGCTGTGCTTCAGGGGGACAAGGTAAGTATGCGGTGGTATTGTTCTGGACTAGCACTTCACAGAGCACCGTCCGGGCTCAGCGTGCCTTCAGGGCTACGGGCCAGCTGCTGTGGCTGGTGTATTTAGGACGCGGTACAGGCAAAGAGAGAGGACCATTGAACTCACAACAGACAGCTGGCCTGAGTACAGTTCTGCTCACTCACCCTGATCCCCGCTCTTCACCTGACTGAAGCCATGTGCTTTTTGCAG
Seq C2 exon
ATGGCTACTCCTACGAGAGAGAAGCAATGGAAAGCTGGATCCACAAGAAGAAGCGTACGAGCCCCATGACAAATTTGGCTCTCCCTTCACTGGTACTGACCCCAAACAGGACACTGAAGATGGCCATCAACCGATGGCTGGAGACGCACGAGAAGTGAACGCGTTCACAGGCATCGGATCCACTTTCAGTGATGCCCTGCAAATGATTCAAAATGCTAAGCAGCCATCACGAAAGCAAAATAAAAGGAAAAGACAAATGTTCAATTCAGTTACTTTTAAAAACTGTAAATTATGAGCAGGGCAGTGGTGGTGCCCACCTTTAATCCCAGCACTCAGGAGGCAGAGACAGGTGGATCTCCAGGATCAGGAGTTCCAGGACAGCCCAGTTTATAGGGCAAGTCTCAGGACGGCCAAGGCTACACAGAGAAACCCTGTCTCAAAAAACCCAAAACCAAAAAAAAAAAAAAAAAAAGTCAATTATCTTTAAAACACAGATTTATATATCTATTGTCATTGCTATTTCTGTAAAGGTGAAAATATTTTTTTTTTTGCAATAATGAGAAACTATGTAGAAATAAAACTTCACTATGACTTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026988:ENSMUST00000028368:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764712=SAM_2=PD(24.2=33.3),PF0456410=U-box=PU(28.8=43.8)
A:
NA
C2:
PF0456410=U-box=PD(69.9=96.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types