GgaINT0048643 @ galGal3
Intron Retention
Gene
ENSGALG00000012526 | PRPF40A
Description
NA
Coordinates
chr7:37181678-37182478:-
Coord C1 exon
chr7:37182383-37182478
Coord A exon
chr7:37181765-37182382
Coord C2 exon
chr7:37181678-37181764
Length
618 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
CTTTTCATGTTGTGCTCCAGCAT
3' ss Score
7.6
Exon sequences
Seq C1 exon
ATCAGAGATAGATTTGTGAAGGAACCAGCATTTGAAGACATCACTCTGGAGTCTGAAAGGAAAAGAATATTTAAAGATTTCATGCATGTACTTGAG
Seq A exon
GTAATTCTTATTTTTTCCTGATGAGAGAATATACGGTACACAGTACTTAGTTGATTGGTTCTTAAATCATACAGAAAGGGAGATTCTGCATTTGTTTGTTTGATTTTGACTGTGAATGTGAACAGTTCATTGGTGCTGTGTAGGAGGGTTATAATGTAGTTTCACCTTAACTTTTGGATCAGCCACAGGAAGAGTTGATTTGCAGAAATCTTGGCAAGTCAGTCTTGTTCAGAAAGGTGTTATCCCTTCATAGGTAATGAGATATAATGTTCGTTTGTTTTACTCACTGCAGTTTGTAGATGATAAAATGGTTTAATTTCACAGTTCTGAATGTTGCAAAGCAAGGTTTGCACTCTATTCTTGGTCAGCCTGAGCAATCACTTCAAATAGGAAGCACTGAAGCAAGGATATGGCTAACAGAAGCTGCGTACATCCATGCCTGAAGCTGTCTGTTCCCTTGCTACTAAATGCTTGTTATAACTTTCACGTGGCACTACTGTTAGTAATACTGTTTTTTAATCACTGCTAGCTATAGGTGCCCTGTGGGTGATGAGAGATGTCATTGGTTTCATGGTGTGCCCTGCAGACTAACATTTGTCTTTTCATGTTGTGCTCCAG
Seq C2 exon
CATGAGTGTCAGCATCACCATTCAAAGAACAAGAAACATTCTAAGAAATCCAAGAAGCACCACAGGAAGCGCTCTCGCTCTCGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012526:ENSGALT00000037747:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0184614=FF=PD(50.0=81.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]