GgaINT0048646 @ galGal3
Intron Retention
Gene
ENSGALG00000012526 | PRPF40A
Description
NA
Coordinates
chr7:37179937-37181268:-
Coord C1 exon
chr7:37181207-37181268
Coord A exon
chr7:37180072-37181206
Coord C2 exon
chr7:37179937-37180071
Length
1135 bp
Sequences
Splice sites
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
3' ss Seq
ATTTTCCCTTTATTACAAAGGAT
3' ss Score
6.94
Exon sequences
Seq C1 exon
AGAGAAGTTACAAGAAGTCAAAAAAACACAAGAAAAAGAGCAAGAAAAGAAGACATAAGTCC
Seq A exon
GTAAGTACAGCTCACTTCTTTCCAGTTGGCTTAAGGCTCAGCTTGACACCTCAGGGCCAGTCACAGTAATCCTGTTTGTTAAATACTGGCAGTTACCAGCTGGCTTTAGAGCAAGCACTTCTCGATCAGATGTTGTTATGTATACCTTAATGTTAAGCCATTTAGAACAGTAACATGGGGGGGAGGGAGGCTTAAACTGCAACTATGGAAGCAAATATGAAGGACTGCAGTATCCTGCTATTGGCTGCTTGTCATCGCAGCACGTCTTGGAGTTGACTTCTATTGTGGAGTGCTGGATAGAATCCCAGTCATCTTTTCCTTTCACCTCATGCTGAGCATCAGTCCTTTCATCTGCCTGAGTAGCAGGGTTGAGTTAGCAGCTCTGACATCAAATGAGCCAGAGCATCAATAGAACCTAAAGAGAAAGAGAGCTTTCATCCTCTGTGTACGTCACTTGAGGCCAAAGTGTATTTTTGGTGTCAGGTAAAGGAGGAAGTTGGTGTCTCTGAACTCAGGTTCCTGTAAAGCTTTTCAAAACAGCAATGTTGTGTTGTTTCTGTAAATCCTGAGCAGTTGGCTGTGCCCTTCAGTGGGCAGCATTCACAAAGAGGAGATGGGTACCAGTGCTAGGCATTGAGTAACATATCGGTGCTGAAGGGCTGCGACACACACAGGGTCACATAAGCTTAGCTGGGATGAAACGCAGGATGAAAACAGGCACAGCACCTGAGCCCTCAGTGCAGCAGAATTCCAGGAGCACGAGAGCATTCAGATGTGGCAAAGCAGCCACAATAACAGATGAACAATTAGCAGACTTCACCCTCCGCAAAGCTGTTATGGAATGAGTGGCATCAGTGTACAGAAGGGATTCACTGCGTGCATCCAGCATGCCCTGTGTTTGCATGCACTAAAAATGGTAAACTTTTTTAGGACTCTCTCCTTTTGAAATAACTTCAGTAATGTTTCTGCATTACTTACTTCTGCCCTGGTTACTAGGACGTGTTAAACTAGCAGCCACTTCTTTCTGATGTGGCCTATATTAAAATGAAATCAGACATTTCTGAGGTGTATTTTATAAACCGTACTACCTAACACATTGAATAATAATATGTAATATTTTCCCTTTATTACAAAG
Seq C2 exon
GATTCACCAGAATCTGATATTGAACGAGAGAAAGACAAAAAAGAAAGAGAGAGAGAAAGTGAAAAGGATAGAGCTAGACAAAGATCTGAATCAAAACATAAATCTCCGACTAAAAAACGACCTGGAAAAGATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012526:ENSGALT00000037747:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]