GgaINT0049023 @ galGal3
Intron Retention
Gene
ENSGALG00000014209 | GPR155
Description
NA
Coordinates
chr7:18086596-18087797:+
Coord C1 exon
chr7:18086596-18086751
Coord A exon
chr7:18086752-18087713
Coord C2 exon
chr7:18087714-18087797
Length
962 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
3' ss Seq
TTATATCTTGTCTGTTACAGATT
3' ss Score
10.94
Exon sequences
Seq C1 exon
ATTACCTCAGGCATGGTGATAAGCACTTTTGTGTCTGCCCCTATCATGTACGTTTCTGCATGGCTTTTGACCATTCCATCTATGGATCCCAACCCACTGGCATCTGCTCTCCAGAATGTTAGCTTTGACATAAGTATTGTCAGCCTTGTTTCTTTG
Seq A exon
GTAGGTGTTGGCAAAGTGAACTACCATTGCACACTAATATCGGGGAAGCTTTAATACACAAGCAGCAAATCGAGTCAAGATTTAAGATTATCTTAATGACATATCATCATTGGATCCTGTTGCAGAAGGATGAAGGAGGAGCTGGGGTTAAACAAAAAAATCTGAAAAGCTGCACTATGAGGGAAAAGAACCTGAAGTGCTTGGATATCACAGTAATGCAAGCTATGTAAAAACTTCTGCTGGACTTGAATTTAAACTCCTGAAATGTTAATGAATATTAAATGAATGAAGTAGCAATGAGAACATTTAACTTGGAAGTTTTAATTTAGCTTTATCAAATTCCTTTCCTAGCAGTTCTGGGTGTCTCATCCTGAAAAAATATACTGAAATCTCCAAAATCTGATGTGAATGATGTTTTGATTTCACAGGCACTATAAATAGTGTGCTTAGTCTTTTAACTTGAAATAAAAGCTTCCGTGTTGGAGGAAGCTGATAACTTGTGAAGTTGGTGTCACATTGAGCCTTTTGTCACAAAACTATCCCTCAAGAGAAGCAGCGAGTAAAAGCTGCCTCTTGCCATCACTAATTGTGCTGGGAGATTTAGAAAGGACAGGGTGAAAAGACTGTTAAATTCCAAACTTCCAGGATATTCTACATCTGTTTATGTCTTGGGAAACAACCAGACTTCTGCACGCAGTAGGCAAACCCTTGCTACTCCTTGGAAATATTTCACCATCATGAGAACACAACAACACATAGCTTTTTCTAAGGCATACAGATTCACAGCAGGTGGTGTTAAGCTGACTGTGGCAGTCATGCTTCTAAGAAACTTCTCAAGAAGATTTGTTGTATATTTAGTTGCACCAAAGTTTGCCAGAGTATTCATCTTGCTCTTTTGTTATTATTGTTGATGTTTTGTGCGTGTGTTGGTCTCACATTTAATTATATCTTGTCTGTTACAG
Seq C2 exon
ATTTGGTCTCTTATTGTTGTTCTTCTCAGTAAGAAATACAAACAGCTTCCTCATATGATTACAACAAACCTACTTGTTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014209:ENSGALT00000022979:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PD(10.9=36.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTACCTCAGGCATGGTGATAAGC
R:
AGTAGGTTTGTTGTAATCATATGAGG
Band lengths:
230-1192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]