BtaINT0068497 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021636 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
Coordinates
chr2:22370059-22371830:+
Coord C1 exon
chr2:22370059-22370214
Coord A exon
chr2:22370215-22371746
Coord C2 exon
chr2:22371747-22371830
Length
1532 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TTTGAAACTCTCTCTTTAAGATC
3' ss Score
7.06
Exon sequences
Seq C1 exon
ATAACCTCAGGGATGGTAATAAGCACCTTTGTGTCTGCACCGATCATGTACGTTTCTGCCTGGTTACTGACTTTTCCCACCATGGACCCTAAGCCACTGGCATATGCCATCCAGAATGTTAGTTTTGATATAAGTATTATCAGCCTGGTCTCCTTG
Seq A exon
GTAAGTATGATTCAGTATAAAAATGAATGAAAATCGCAGAGTGAATCTGAAAATAGCTTGGTAATAGAAAGTTATGGAATAAAAACCTAATTTCTTGTACAATAGAGAAAACTGAAGCCTGCCCATGAAATGTAATATTAGCCTTCTGAGTTTTGCCTTTCCATTTGGGAGGTAGAATTGTATAACAGACAAGGCATGAGATTTAGTCAGACTTGGATTTGACTCCTGGTGCTGTCACAAACTGGGGTTTCCTGGGTGGCTCAATGGTAAAGAACCCACCTGCCAATGCAGGAGACATAAGAGACACGAGTTCGATCCCTGGGTCGGGAAGATCCCCTGGAGGAGGGCATGGCAACCCACTCCAGTATTCCTGCCTGGAGAATCCCCATGGACAGAGGAGCCTGGTGGGTTACAGTCCATAGGGTCACAGAGAGTCAGAGACTATTGAAGCAACTAAGCATGCACGTATGCACCTATCACAGACTAGCTGTATTTCTCTGTGGAGTAAACTTAACTGCTCTAAGGTTAAGTTTTCTCATCTATAAAATAGAGATAATAACTTCACCTATTTCCATGGTTTGTTTTAAGGATTACATGAGATAATATATATAAAAAGCATTCTGCAAATGGTGAATCACTATACAGATACTAGCTATCGTAGAACTGTGTTTTTGTCAGGGACCTTTGGGATTAAGACCAAACACCCATTTAATGTTAATGAAACTTTTGAATATATCTAGCCCATATTAAATACTTATACATTTGGCAACTAGAGTATCTTGTAGATTGAGTGCCTATTGAATTCAAATAGTATTCTGGCTTAAAAAAAGAGAATATTTGCTGTCAAAGGAGATAAGGATGAATATATACATTGGCAACAAATACACATGTGATTAATATAGTTTTTAAGAAATTTTGCTTCTGTTACATATTCTTAAAATCTATGCCCACTGATAAGGCAGTTTGGTGGAGGGGGGGAGAGACAACATAACTTTGATTGACAACGTGGTGAGAAGAAAGAAGGAAATCAAATAACATATTTAGGTAACTATTATGTATCCTTCTAAATGTAAAGAATGCAGGAAAATTCATCTTAAGGAGGGTGACATGTATTGTTGGAAGTAAGATAGCCTGGAATTTAGATACCTCATGAGCCAATATGGTGGAATCAAAAAGGGAAAACTTACGGTAGTGCATTATAACTGCATCTCCCACTAATCTCTTTTTCTGAATAGTTGGCTGTGAACCTATGTCCCATCCCAGCCACCAAAGGTAGGGAAAGTTGGAACATGGCCCTGGTCAAGGCATTCTCCCCATGCTTTTTATTTTACTTTGGATATTAGTTTACCTTAATACCCTTATGGGAACTAAGGTTAAAATAAATAAAATATTGCTGTTCCTTTTTGAACCAGGATAAAAGAATTCTTTAAAGAGTCTAATAAGTAATTAGTAATTAAAAATAAAAATTAGTAATTAATAAGTAGTTATAAAGATTAAGAAACCTGAATAACTTTTGAAACTCTCTCTTTAAG
Seq C2 exon
ATCTGGTCTTTGGCTATTCTTCTTTTGAGCAAGAAATATAAACAGCTTCCTCATATGCTTACAACTAATTTACTCATCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021636:ENSBTAT00000028831:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PD(10.9=36.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCAGGGATGGTAATAAGCAC
R:
CTGAGCGATGAGTAAATTAGTTGT
Band lengths:
238-1770
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]