GgaINT1014149 @ galGal4
Intron Retention
Gene
ENSGALG00000014209 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
Coordinates
chr7:16387041-16388242:+
Coord C1 exon
chr7:16387041-16387196
Coord A exon
chr7:16387197-16388158
Coord C2 exon
chr7:16388159-16388242
Length
962 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
3' ss Seq
TTTTATCTTGTCTGTTACAGATT
3' ss Score
11.97
Exon sequences
Seq C1 exon
ATTACCTCAGGCATGGTGATAAGCACTTTTGTGTCTGCACCTATCATGTATGTTTCTGCATGGCTTTTGACCATTCCATCTATGGACCCCAACCCACTGGCATCTGCTCTCCAGAATGTTAGCTTTGACATAAGTATTGTCAGCCTTGTTTCTTTG
Seq A exon
GTAGGTGTTGGCATAGTGAACTACCATTGCACACTAATATTGGGGAAGCTTTAATACATAAGCAGCAAATCGAGTCAAGATTTAAGATTATCTTAATGACATATCATCATTGGATCGTGTTGCAGAAGGATGAAGGAGGAGCTGGGGTTAAACAAAAAAATCTGAAAAGCTGCACTATGAGGGAAAACAACCTGAAGTGCTTGGATATCAAAGTAATGCAAGCTATGTAAAAACTTCTGCTGGACTTGAATTTAAACTCCTGAAATGTTAATGAATATTAAATTAATGAAGTAGCAATGAGAACATTTAACTTGGAAGTTTTAATTTAGCTTTATCAAATTCCTTTCCTAGCAGTTCTGGGTGTCTCATCCTGAAAAAATATACTGAAATCTCCAAAATCTGATGTGAATGATGTTTTGATTTCACAGGCACTATAAATAGTGTGCTTAGTCTTTTAACTTGAAATAAAAGCTTCCGTGTTGGAGGAAGCTGATAACTTGTGAAGTTGGTGTCACATTGAGCCTTTTGTCACAAAACTATCCCTCAAGAAAAGCAGCGAGTAAAAGCTGCCTCTTGCCATCACTAATTGTGTTGGGAGATTTAGAAAGGACAGGGTGAAAAGACTGTTAAATTCCAAACTTCCAGAATATTCTACATCTGTTTATGTCTTGGGAAACAACCAGACTTCTGCACGCAGTAGGCAAACCCTTGCTACTCCTTGGAAATATTTCACCATCATGAGAACACAACAACACATAGCTTTTTCTAAGGCATACAGATTCACAGCAGGTGGTGTTAAGCTGACTGTGGCAGTCATGCTTCTAAGAAACTTCTCAAGAAGATTTGTTGTATATTTAGTTGCACCAAAGTTTGCCAGAGTATTCATCTTGCTCTTTTGTTATTATTGTTGATGTTTTGTGCGTGTGTTGGTCTCACATTTAATTTTATCTTGTCTGTTACAG
Seq C2 exon
ATTTGGTCTCTTATTGTTGTTCTTCTCAGTAAGAAATACAAACAGCTTCCTCATATGATTACAACAAACCTACTTGTTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014209:ENSGALT00000022979:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PD(10.9=36.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTACCTCAGGCATGGTGATAAGC
R:
AGTAGGTTTGTTGTAATCATATGAGG
Band lengths:
230-1192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]