MmuINT0073085 @ mm9
Intron Retention
Gene
ENSMUSG00000041762 | Gpr155
Description
G protein-coupled receptor 155 [Source:MGI Symbol;Acc:MGI:1915776]
Coordinates
chr2:73206371-73208198:-
Coord C1 exon
chr2:73208043-73208198
Coord A exon
chr2:73206455-73208042
Coord C2 exon
chr2:73206371-73206454
Length
1588 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TTGAATCTTTTATCTTCAAGATC
3' ss Score
7.04
Exon sequences
Seq C1 exon
ATAACCTCAGGCATGGTAATAAGTACATTTGTGTCTGCTCCAATCATGTATGTTTCTGCCTGGTTATTAACCTTTCCTACCATGGATGCCAAGCCACTGGCGTATGCCATTCAGAATGTTAGCTTTGATATAAGTATTATCAGCCTGGTCTCCTTG
Seq A exon
GTAAGTATGTTGTACTGTCAAATTGAATGGAAACCACAAAATAAGTTTGAAAGTAACTACTAATAGCAGTTTAAAAAAACAAACAAACAAACTATTTATTTAACAAAACAGAGAAGTAAAACCTATCTGAAAAAAAAAATGTAATCTCAACTTTGTAATTGACTGAGTATGTCTTTCCAGTCAGGAGTTTTGAGCTGTATAGTCGGCATGGTGTGAGACTCAGACAAACTTGGATTTGATTCCTTGTCCTATTGCGGTTTATCTATATCTCTCTTTGGAGTTACTTAATCTCTCTTAAGCTTAGTTTTCTTAGCTACCAAGATAATCATTCCACCCATTTCTATGGCTTGTTTTAAGGTTTGAGACAATGAGATAAGCATTCTATGAATAATGATCACCGTACAAATAACAAGCTATTCTAGCATCATAGGATCAACAAAGGTCTTTGGGATCAAGATCAACTATTTAAGTGAAACTTCAGATACCTTTTCAAACTTGATCCTGCTACCTCAAATGTATATGCTTTTAACAACTAGAGTATCCACATTGGTCAGATTGCCTGCTGAATTCCGTCAGAATTCTAGATTCGAAAAAGGCAGTGTTTTAAGGAATGGATACATATAACAATAAATAAATGCATGATTAATGAGTTTTTAGAAAAATTCATATCTACCACATATTCTGAAAAACCTATGTTCCTTGATAAGAAGGTAGTTTGGGGAGAGAGAAGGTGTCAACTTCTATTGGCAATTAAGAAAAGGAACAAAATTAGCTAGCACACTTTCCTGGGCACTCTAAAGGCAGAGTAGAAATGCAATTCTTGTTCTGGGGTGTCGCTTAGTGTAGATCATGTGCTTATAATGCATGAGTCCCTAGGTTCTGGGTACTAGCCAGAAAAAAAAAAAAAGAGAAGGGGGAGGGGGAGGAACCCAATCCTTTTAAACACTAGGAATACAAGATTGATCTTGGTGTGGGAGGTATGTGTTGTTTGAAATAAGACCACCTGGAATTTAGAGTACTCAGGAACTAGTATCATAGAATTCAGAAAGGAAAAAAAAAAAGAATTAAAACATTCTTTCCTAAATAATTGGTTGTGACATAGTGCCCTATCCCAGCCACACTGTAGGTAGACATACTTAGAATATGGCCCTAGACAAGCCATTAGTTCTTAAAGAACTAATTTGTTAACCATGGGATCTCCCCCCATGCCTTTTATATCACCGTGGATGCAGTAATTTATATTAACAATCTTCAGTTTCAACGAAACCTTAAAATCTCTCCTGGGACAAGGATGAAGAGGATTCTCTAAAAGTCTTAACCACGGGCCCAGGCATCGTGGCACTCACTTGTTACCTTAAGCACTGGGAGGCTGAGACAGGAGGGTCTGGAGTTCAGTGCAAATCTGAGTCATATAGCAAGGTTGTCTCAAGAGAGCCAAGGGCTAGGATGTAGCCCGAGGCTGAGTGCTTGTCTGTCGTATATAAGGCCCTGAGTCCAATCCCGTGTCACAATAACAAGATTTTTGATGTTCTGTTTAATAAGTAACTATAAAGATTGAGAAAGATAACTTGAATCTTTTATCTTCAAG
Seq C2 exon
ATCTGGTCCCTGTCTATTCTTCTCTTGAGTAAGAAATATAAGCAGCTCCCACATATGCTCACAGCGAACTTACTCATCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041762-Gpr155:NM_001080707:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCAGGCATGGTAATAAGT
R:
TGAGTAAGTTCGCTGTGAGCA
Band lengths:
230-1818
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: