DreINT0074449 @ danRer10
Intron Retention
Gene
ENSDARG00000071086 | gpr155b
Description
G protein-coupled receptor 155b [Source:ZFIN;Acc:ZDB-GENE-110815-2]
Coordinates
chr6:10531397-10532769:-
Coord C1 exon
chr6:10532614-10532769
Coord A exon
chr6:10531481-10532613
Coord C2 exon
chr6:10531397-10531480
Length
1133 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TGTGTGTGTGTGTGTTGTAGGTT
3' ss Score
11.95
Exon sequences
Seq C1 exon
GTGACCTCTGGTATGGTAATCAGCACGTTCCTGTCGGCGCCCATCATGTATGTGTCTGCATGGCTTTTGACCATTCCATGGATGGAGGCCTCGTTCCTGGTGAAGGAGCTGCAGGACGTCAGCTTTAACATCAGCATTGTCTGTCTGATAGCACTG
Seq A exon
GTGAGTGTGTATGTGGGTTTCTCTCTTTTCTATTCTGGTGCATATCTGTTTCTAAACAATTTTGGTTTATGAACTAGTATTATTTTTAGCTATTCTTTTCTGTTTTTATTTAAAAAAATATATAATAATCAAATATAAATCAAATGGTGTAAAATTAGATTATTATAAAATTACATACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTTGTGGGCTAAAAAAAAAATTAGAAGGGGAACCCTTGGATTTGCTATAGCCCCAGGGTCCAATGTGTTCTTAATCCGGCCCTGCCCGCATTTGCATACATACACTGTACAAAACAAACAACAAATCAACACAAAAACACTTTCAAAGAAGAGAATTGCATATTTATGTAATTTTATGCATTTATGCATTTAATATTTATGTGTTTTATTAACTATGATGACTTCTGCTAAGAAACCTGAACATGTGAAAATGGTCTATTCTATTCTATTCTATTCTATTCTATTCTACTCTATTCTATTCTATTCTATGACATGGTTCCTTTCTGTTCCCTCTTGTTTACTTCTCATTCTCTACCTTCCTATTTCTGTTCTGTTCTATAATTTTTCCTCTCTTTCAAAGTTTCCTATGGTTCATGGCTGATTTTATCCTATGTGGTTGTTTACTTTTGTCTATTCGATTCGATTCGATTCTATTCGATTCTATTCTATTGGACTGTAGGGGAAACCGAAGCACCCGGAAAAAACCCATGCGAATGCAGGGAGAACATGCAAATTTCACACAGAAACGCCAACTGACCCAGCCGAAGCTCGAACCAGCGACCTTCTTGCTTTGAGGCGACAGCACTACCTATTGTGCCGCCGTGTTGCCCTCTATTCTATTCTATTCTGGTCTATTGCAGATTGCTATTAGTGTTGAATGATGTGGTTTAATGCGTAACCAACATACATAGGAATGTTTAGAGGCTTAGAAATCAAAGGGTTTACATAAAAAAAAAAATGAAATGTCTGATCCATAAAACAGAGGGATACAGAATCTGGATAAATAAATGTTTAAGGGTGTGTGTTTATATTTGTGTGTGTGTGTGTGTGTGTGTTGTAG
Seq C2 exon
GTTTGGACCCTTGCTGTCATGCTACTTAGTAAGAAGTTTCGGAGGATGCCACATATGTTTGCCACAAATCTGTTTTTAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071086:ENSDART00000151714:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PD(10.9=36.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTCTGGTATGGTAATCAGCA
R:
TGTGCTAAAAACAGATTTGTGGCA
Band lengths:
238-1371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]