RnoINT0066977 @ rn6
Intron Retention
Gene
ENSRNOG00000018485 | Gpr155
Description
G protein-coupled receptor 155 [Source:RGD Symbol;Acc:1309162]
Coordinates
chr3:60086657-60088437:-
Coord C1 exon
chr3:60088282-60088437
Coord A exon
chr3:60086741-60088281
Coord C2 exon
chr3:60086657-60086740
Length
1541 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
CCGAACCTTTTATCTTCAAGATC
3' ss Score
6.15
Exon sequences
Seq C1 exon
ATAACCTCAGGAATGGTCATAAGTACATTTGTGTCTGCTCCAATCATGTATGTTTCTGCCTGGTTATTGACCTTTCCTACCATGGATGCTAAGCCACTGGCATATGCCATTCAGAATGTTAGCTTTGACATAAGCATTATCAGCCTGGTCTCCTTG
Seq A exon
GTAAGTCTGCTTCAGTGTCAAATTGAATGGAAGTCACGACATAAGTTTGAAAGTAACTACTAATAGCAAATTATTTTTTAAAAAAACTATTTAACAAAATAGAGAAGCAAAACCTATCTGAAAAAGTGTGATCTCAACTTTGTAATTAACTATGTCTTTTCAGTCAGGGGCTTTGAGCTGTGTCATGGGCAAGGTGTGAGACTCAGCCGACTTGGATTTGAGTCCTGGTCCCGTTGCAGTTTATCTATGTATCTCTTCCGAGCTACTTAACCTCTCTTAGGCTTAGTTTTCTTAGCTACAGAGATAATCATTTCACCCAGTTCTGTGGATTGTTTTATGGTTTGAGACAATGAGATAAGCATTCTATGACTAATGATCACCATACACATAACTAGCTATTCTAGCATCGTAGGATCAGCAAAGGTCTTTGGGATCAAGATAACCATTTATTTATGTGAAATTTTCAAACATGGTCCTGCTACCTCAAACGTATATGCTTTTAACAACCAGAGTATCCACATAGGTCAGCTTGCCTGCTGAATTCAGTCAGAACTCTAGATTAGAAGGAGACAATGTTTTTAAGGAATGGATACATATACTAGCAATATGCACGATTAGTGAGAGTTTTAGAAAAACTCATATCTATCACATAGTCTGAAAAATCTGTGTTCTTTGATAAGAATGTAGTTTTTATCCAAGTGGAGAGAGAGAAGATGTCAACTTACAGTGGCAATTAAGAGAAAGAAGAAAATCACTATAAATGCAGGATGGAAACACAGTCTTGTGCTGGGTTCTAGCTTAGCTGTAGAACATGTGCTTAGCATACATGAGCCCCAAGGTTCTGGATACCAGCCAGAAAAGAAAGGAGAGGAGGAAGAAGAGAAAACACCCAATCCTTCTAAATACTAGGAATATAAGATTAATCTTGGTGTGGGAGGTATTTGTTATTTGAAATAAGACCACTTGGAATTTCGACTCCTCAGGAGGTAGTATCATAGCAATCAGAAAGGGAAAATTTTTTTAAACGTTCTTTCCTAAATAAATGGTTGTGGCATTGTGTCCCATCCCAGCCACTGTAATAGGCTTACTTAGAATATGGCCCCGGTTGAGCCATTAGTTAGTTCTTACAGAACTAATTTGTTAACCACGGATCTCCCATGCCTTTTATATCATCGTGGATACAGCAATTTATATTAACAAACTTCAATTTCAATGAAACCTTAAACTTTCTTCTGGGACAAGAATAAAGAGGATTCTCTAAAAATATTAACCATGAGACCAGGCGTCGTGGCACACACCTGTTACCTGCACTGGGAGGCTGAGACAGGAGGATCGGGAGTTCAGTGCAAGACCGAGTTATACAGCAAGGTCCTGTCTCACAAGCCCAGGGCTAGGATGTAGCCAGAGGCTGAGTGCTTTGTCTATCATGTATAAGGCTGCGAGTTCAATCCCATACCCCAATAAAAAAAAGATTTTTGATGTTCTGTTTAATAAGTAACTATAAGGATTGAGAAAAATAACCCGAACCTTTTATCTTCAAG
Seq C2 exon
ATCTGGTCTCTGTCTGTTCTTCTCTTGAGTAAGAAGTATAAGCAGCTTCCTCACATGCTCACAGCTAACCTACTCATCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018485:ENSRNOT00000025158:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PD(11.0=36.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCAGGAATGGTCATAAGTACA
R:
CTGAGCGATGAGTAGGTTAGCTG
Band lengths:
238-1779
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]