HsaINT0071568 @ hg38
Intron Retention
Gene
ENSG00000163328 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
Coordinates
chr2:174466544-174469067:-
Coord C1 exon
chr2:174468912-174469067
Coord A exon
chr2:174466628-174468911
Coord C2 exon
chr2:174466544-174466627
Length
2284 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TTGAACCTTTTGTCTTCAAGATC
3' ss Score
7.52
Exon sequences
Seq C1 exon
ATAACCTCAGGGATGGTGATAAGCACATTTGTGTCTGCTCCCATCATGTACGTTTCTGCCTGGTTACTGACCTTTCCCACTATGGACCCTAAGCCATTGGCATATGCCATCCAGAATGTTAGTTTTGATATAAGTATTGTCAGCCTGATCTCCTTG
Seq A exon
GTAAGTACGTTGCATCCCAAAATGAATGGAAACCACAGAATGAGTTTTGAGAATAGACTGTTAACAGAAGGGATTTAAAAATCTAGTTTCTTATGAAATAAAGAAAGCTAAAGCCTGCCCATAAAATATAATGTCAGCCTTCTGATTAACTGAGTTTTGTTTTTCTATTTGGGAGTTAGAGTTCTATAGCAGACAAGACATGAGATTTAGTCACACCTGGATTTTATTCCTGGCCCTCTCACAAACTAGCTGTATGCCTCTGTGGAGTTACCTTAACCTCTCTAAATTTCTGTTTTCCAGCATAAAATAATGACAATAATTTCACATATTTCCATGGGTTTTTTAAGGGGTTACATGAAATAATATATGTGAAAAGCATTCTGCAAATGATGAATCACTATAGAATTCCTAGCTGTTCTAGAATCATGGGGTCAGAAGGTATCTTTGAGTTCAAGTCCAACCGCCTATTTAATGTTAATGAAACTTTTGGTTACTTCTCAAACTGAATATATCTAACTAAAATTAAATAATTAAGTATATGACAGCTAGAGTATCTTACAGATCAAATGGCCTATTGAATTCATGTTAGTAAAACTACAGATATTCTGGCTGAAAAAAAAGACAATGTGTACAGTTAATGGAGGTGGGGGTGAATATGTATATTGGTAACAGATAAATGTGTGATTAATTTTAAAGAAATTCCACCTCTGTCACATGTTCTTAAAATCTACTACACCCATTCATAACAGGGCAGTTTGGGGAAAGAGACCATATACATTTCAGTTGGCAATGAGGAAAGAAGGAAGTCGCCAGGATACTTACCTGGCCAATACGTAGGTAGAATGGAAACCCAATCCTTTAAAATATGAGGAATGTGATCTGGCACCGTGGCTCATGCCTGTAATCCCAACACTTTGGGAGGCAGAGGCAGGCAGATCACTTGAGGCCAGGAGTTCGAGACCAGCCTGGCCAACATGGAGAATCCCCATCTCTACTAAAAATATAAAATTAGTCAGGCATGGTGGTATGCATCTGTAATCCCAGCTACCTGGGTGGCTGGAGGCACAAGAGTCACTTGAGTCTGGGAGGCAGAGGTTTCAGTGAGCCGAGATCGCACCACTGCACTTCAGTGAGACTCTGTCTCACACACACACAAAGAATAAAAAATGAAGAATGTAAGATGATTAATCTTAAAGGTGTGTGGTATGTGTTGTTTGAAGTAAAACAGCCTGGCATTTAGATACCCCATGAGACAATATGTTGGAAATAGAAAAGGAAAAAAACTTAGAATAGTGCATTATTATAACTATCTCCCACTAAAGCTCCTTCCCTGAATAGTTGTCTGTGACCCTGTGTCCCACCCCAGACACGGAAGGTAGGCATAGTTAGAACATGGCCCTGGTCAAGGGATTAGTTCTTTTTTGTTGAGACAGAGTCTCCCTCTGTTGCCCAGGCTGGAGTGCAGTGGTATGATCTTGGCTTGGCTCACTGCAACTTCTCCCTCCTGGGTTCAAGCAGTTCTCCTCCCTTAGCCTCCCAAGTAGCTGGGATTACAGGCATACACCACCACACCCAGTAGAGGTGGGGTTTCGCCATGTTGGCCAGGCTAGTCTCGAACTCTTAACCTCAAGTGATCCGCCTGTCTGGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCACCTGGCCAAGGCATTAGTTTTTTTTTGTTTTGCTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTAGAGTGCAGTGGTGCAATCTTGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCAATTCTTCTGCCTTAGCCTTCTGAATAGCTGGGATTACAGGCGCCCGCCACTGTGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCGTCATGTTGGCCAGGCTGGTCTCGAACTCCTGACTTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTAAGATTATAGGAATGAGCCACGATGCCTGGCCACATAAGTTCTTAAAGACCCTGTAATTTTTGGAGAGTTAATTTATTATGGGATCTCTCCATGCTTGTTATTTTACATTGGTTATAATAATTTACCTTTTTGGAACTAGACAGATTAAATAAAATATTGGAAATTCTTTCCGAACCAGGACAAAGAGGGTTATTTAAAGAGGCTAATCATTGTGTTATTTAATAAGTAATTATAAAGATTAAGAAACATGAATAACTTTTGAACCTTTTGTCTTCAAG
Seq C2 exon
ATCTGGTCTCTGGCTATTCTTCTTTTGAGTAAGAAATATAAACAGCTTCCTCATATGCTTACAACTAATTTACTCATTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163328:ENST00000392552:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PD(11.0=36.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development