GgaINT0049398 @ galGal4
Intron Retention
Gene
ENSGALG00000009283 | KIAA1715
Description
KIAA1715 [Source:HGNC Symbol;Acc:HGNC:21610]
Coordinates
chr7:15874991-15878092:+
Coord C1 exon
chr7:15874991-15875178
Coord A exon
chr7:15875179-15878033
Coord C2 exon
chr7:15878034-15878092
Length
2855 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
CTCTTCTTTCTGTTTTGAAGAAT
3' ss Score
8.16
Exon sequences
Seq C1 exon
GAAATACAGACCTTAGAAGAATTTAGAGAAAAAAATCAGAGACTTCAGAAACTATGGGTTGGAAGGCTACTCTTCTACTCTTCACTTCTTTATCTTGCCACCTGCTTAATTGTATATTTGTGGTGTCTTCCTGATGAATGGACAGCAAGGTTTTTTATGACACTTCCATTTTTTGCATTTCCACTGAT
Seq A exon
GTAAGTACATGTCTTTGTTTTTTTTAAATGGTTGTCCTTTGGTAGAAGGAGATGGAGAATACTTTGCGGCAGGGGTTTGGGTTTGTTTTTGATGGTCTTTGAGTTCTCATAACTTGCTGAACTTTTCATTTTAAGATAAATCCAAGTAGTAAGACGGATGCTTTCTTTAAGGGAAAAGTTTCTCTAAGGATTGGATTTAGTATTTAATTAAGTCTTATCATCAGAAGATGTTAGCATCTAAAGTTACTTGACTTACCAAAATTATAACAGAGCTACAGAGAGAGCTGTACCTGAGCAGCTGCCAGTTAACGTAATATAAACAGAAGAACACTTTCTTGTGTTGTATTTCTGCTGCTGTTTTGGAGAAGTAACACTACTGTATGGAAGTGATTCAAGGTATTTTGCCTGTATGTGAAATGAACCATATAAAATAGGAGGAAAAAGTTTGAGGCTGACTGGAAAAACTGAATTTTTGTTGTTAGCTGAATGTTAATGCTGAGGTGACGTGGAAGGTTATCAGGCTAAATATATTGAGGATCAATTTTATGTAAATAGCTATATTTTTTTTCTGTAAGTTCCTTTTCTGTTTAAATAGAAAATACCCTGTATTTGTGCAGCACAATGGTATGGAAACCTGATTTGCCAGTGCTCTAGCTCTAGACTTGAAAGGTAGAGTCAAGTGTATATATTTGAGGATCTGCAAGATGGATTGGTGTGGATAACACATAACATAACATGTGAAAAGACACATGAAGTTATTCTCTGTATGTTATATTGTGTTATGCGTAACGTTGTCTGTGTTGCTGTTATAGAGTCCTATGGAGAAGATAGATGGACAGTGCTATCTTTTCTGGAAAGAATTAATTTGTAAATTAATCTTGGGCAACAATATGAATTGTTTAGTTCTTAAATGCAGTGATTTGAAGGCTTTTGTTGTAGGCATGCAAAGCTTGCTTATGCTACCAGTGTAAGTGTGTAGAAAAGGAACCTTCACTTGACTTGAGATAGGAGGGCTTGTGTAGAATTGAAAAATTTCCAACTGAAGGTGTTGGCTTCTAGTGCTCTGGTGTGAATTTTCACTTTGGATTTTCCCTAGTTTGTCTTCCCAGCTCTTGCTTCACTTTTTTGGAATGGTGGGATTTCTGAATTAGATTACAAGTTCAGAGCTAGACTTGTTTTTTATCATTTGTGACAGTTCATCTGATTCTTCTTCTATTAAGCTATTACACTTCAGGTTTTTTGACAGATATGAATGGCGAACAACTGCCAGCTTGTCTTTGCTCTCAGTCAGGAGGTGCCACCCAGCAATAGCTCTACAGATTTCTTCATCTTTTTTTTTAAAGCCCTAATCAAACTGGAATATGTCTGCCTTTCCCACCTGCAGTCAGTCACCAGCTTGTTTCTGCCTTAGGTCATTCCTTCAGTCCTGGGATGTTAATGGTAGGGTGAGTTAACTGCTAGGATCGATTTGAAATGTGTATTAATACATCTGAGAAGTTTTGTATTTTAGGGAGATATTCTTGAAAAAGAATCTATTGAAATGGAAACTATTTCATCTTGCCCTAATTCTCATAGAAATGTTTTTCACTTTATGCTTGTTATGTTTGTATGAAAAGATCTGTTTTCCAACTTTCACCTCGAAGTTTCATGAATCTTCTGCTTCATGAAATCCTACCGTGTGTCTTTGCTTAGGATACAATTTTAGGTAGGAAAGGACACTTCTATATTGAGCATAGATAAGAACAAAGAAGTAATGCCTGTGTACCATAGTATTCTTTCTTCATGGGAAGATATATTTTATGTTGTTAAGAGACAAAGCTGTCTGTATTCTTAAGTTGTTACAGTACGGTTTTGGAAGTGGAGTAGTTAAGCTTGTTTCTCTTACTTTGGATATGTTACTTTCACATTCCATTGGCCTTGTCTGATTTACCTAATTCATGTTTTGTTATTGTGTAAAAGCATTTGAAACTGAGTAGGCATTATATAAATACAAAATATGTTTTTATGAATTGCTCAAAAGTAAGTATTTTTAAATCTTGCATTATTTTGCTTGCTTTCCTATGCTAGTTATTATTCAGAAAATGTGTCTAGCCTTTAGGATGTGGATTTTTTTGCTTAACTGAAACTTAGCTACTTTATCATAATTGTAAACAATTCTGAATGAAAAGAAGTCTTAAGGATTGTAGAGAAGCCTTTCAAATGTAAATCAGACATAGATCACTAATTTGATCTTGAGCACAGATAAAGCTGCTGCATTGTTTGAGCTAAGTCAGCTGAAACTGTACAGAATGTGACTGGATTCAGAGCTCTGTAAAATCAATAGAAGTCAGGACAGTTACCTTTGTTTGGGAGAGCATTTACACAATAGCTCTATCTCTTGCCTTTCATTGGTATTGAATTCCTTCTACAAACCTCCTGTGTCTTAATTTTGGGACTTAGCTGGTAGACTTGTTTTTTGGATAACTTGCTTCATAAATTTATCTAACAAGAAACAATGAGTAGGTAGTTTTCAGCTAGTTTCATATACCTTGAGGTTTCCAAACCTTCTCATGGAGCGTTTTAGCAGGCAATGATGTTACTGCTAGAGCTTCCCTAGTATTTCTACCTATAGTAGTATTTGTTTAGCTATTATTCCAGTTGGATTTTGTTTATGTCAATGTTGGTGTCTTGTTGGCAATGTAGTAATTTCATTTATAGCTCCTTGCTTAAATATTGTTTGAAGATGTATTCTTTGCATTTACAGAATTAAATCTCACGTGATAAGTCTTCTGTGTGAACTGTCTGTTTTGCTAAATGACTTGAGAAATGATTACTGTAACATTTTAATTAATATAACTCTTCTTTCTGTTTTGAAG
Seq C2 exon
AATCTGGTTTATAAGAACACTGCTCATTTTTTTCTTTTCCAAGAGGACAGAAAGGAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009283:ENSGALT00000015103:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]