GgaINT0050079 @ galGal3
Intron Retention
Gene
ENSGALG00000012449 | MBD5
Description
NA
Coordinates
chr7:36321169-36324948:+
Coord C1 exon
chr7:36321169-36321242
Coord A exon
chr7:36321243-36324872
Coord C2 exon
chr7:36324873-36324948
Length
3630 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
CATTAATCTTTTCTTCCTAGAAG
3' ss Score
6.72
Exon sequences
Seq C1 exon
GTGGAGCCAGAGAAGTTGAAGACACTAACAGAAGGTCTAGAAGCTTACAACCGAGCCAGGAAAAGGAACAGAAA
Seq A exon
GTAAGTGTGCTCATTTGCTTACCAGTGGGGTGAATAATCACATGCTTTTGCTTCCAGGGACTCTCCTTTTGGGGACCCTTGCAGATCTGCCAAACTGAAAAGTTAATTTTCTGAATTCCTTGCGTTGGTTGTGATAATCATCCAAGATCTTTGATATCTGCATTTTTATTGCATCTTCTGATATTTACTGTAGCCTTTGTAAAATGTCAGCCTGCTTGTTTGAGCTTTCATGTGAGGGATTCTAATTTACAGCCAAAAAAAGTTATTACATCCAAACTACTCTGACCAAATCCAGTTTTTCACAAGATCTGCTCTTCTTATCTCTTCCCTCTCCCTCTCTTGGCTGCTGCAGCAGGCAGAGCCCGCCTGTATTCGGATAAGTTCTGTTGTTCCCCATTGCAGAGGAGCTCCCTGCAGTGGGTGAGGGCTGGCAGCGGTTAGCCGGGCAGCAGCTCCCATGCAGTCACACACCTCTGGCCTGGTCGGTTTCCTCTCACCCTTTGGCCTTCATTTACAAACATGCAAGGGTAGAAAGACTGGGAAACACGAAGAGGTGAAGCATAAGCTTACACAGAAAGAGGAAAGTGAAATTGGCTGTAGGAGAAAAAAAATTCTTGACAGCTGTCAAAGGACAAGAGTAGAGATGGGGGTTATCCTGGGATGGTGGCATTTATTTACTGTTGTGGTGAGAACGCATTACTTTGTGAGAACTCAGCCAGTTTGCAGCGCTGCCTTCAGAACAATAAACACAGACTTTCAGGAATTAAATAATTATTTGCCCTCAGCTCCTTTTAAGGTGTAAGCTTTTCCTCTATTTATATGTCAAGCAGTGCTTAGGAGAAATACTTCTAATGCCAGCGAGACAATGTTGAGTTTTTTTCAGTGCCATCCTCACAACATCTGAGGGCAGTCTGAGGGCAAGCGCTGAGCAGCCAGGAGGGCTGCTGGCACCCCCAGCTATTGCTGCTCCCTGAAGCAAAATACACGACTTGAGGAAGGTGGCAGCAGAAGCACATGGAAAGAGGAGTTGAAGCTGGAATAAGCAGTGCAATTTAGGAAGAGCTCCCGTCTTATGGTTTGCAGTTGCATATCTAGCAGATTGCAGGGGTTGTCCAGAACTGTGCTGAACCCAATCGCCTTTTTGTGGCGTTACTGGCTCTGCATCATTGCTCGCACATTAGGAAACAGCAGCTGTCAGGTACCCCAGCAGCGTGGGGCCCCAGGTACCCCTTTTCACAGGGTTACCTCACAGCCCATACAGGTTTTTCTCCATATTTCTACTTCTACATATTTTATGTTTCAAATGTTTTACTCTTTCTTTGTGGACCAGAGGGCAGCTCCTTCTCTTTGACCTGCGCTCTGTGCTGAATGTTTCTGAAACAGTTTTTGACCTCTTTATGGTCTGTTTTGTTGCGTGTGCCTCTGGTTCCACACAAGTCCACAATTTTGGAACATCAACCATTAGATTTAATTGTTATCCATGGCATACAGCTCTCTTTTTGCTTCTGCCTGGATAAGTACCCAGCACATACACATACCAGGTACTGACATCAAGTTGGACGCTTCTGTAATAGAAAAGACAGGCAAACAAGTCCAAGAGAATATGGACTAGCAGCACATCAGTTCAGTGTCTTTTGCAGAGCAAGGTTAACATCCAGATCCTCAAAATGATATTTCATTCTTTGTGTTCCTACCATCAGGAAAAAACCCTGCCTAGAAGGAACACTTTCTTCTCCAAAGAGCAGTCAGGCAGCAGCACAGCTGCCCATGGAGTGGGGGATCACCATCCCGGGGGGTGTCCCAGAGCTGTGGGGATGTGGCACTGAGGGACGTGGGCAGCGGGCGATGGGCTGGGCTTGGGGATCCTAGAGGTCATTTCCAATCCTAATGATGCTGTGAAGACTTTAAGCTCTTCGCCTCAAATGCTGTGGTGGTTGCAGGTTGTTTCAGATCACCAACAACCTGTTGCTGATGTTCATCTGATGTCAGGTTCTCTGGTTGTCAGGATGTTGCCTGCTGTAAATGATGTCCCAGTGATGGGCCCTTCTGAAACATTGGTTTGCTTGAGGGCAATTCATCACCTTCATAGTAAAGTGTTGCTATTAAAAACACATAGCAGCAGTGTCTTAAGACTGCACATCATCGTTTGTATATCAAATACTTTCAAACGGCTGCTTGGGCTACTGGCAGTAATTACATAAGCATCTGGTGGGGGTGGAAAAGACCTCAAGCCAAGCTCCTACCCAAAGGCAACACATGCAGAAATCAACCTGCTATGTAATATTTCTTTGGATTATTTTAATTGCTACTGCTAGTGACGGGGAACGTCAGCCTACGTGAAGTCACGTCAATCATTTTTGGCTTTGCCATACTTTCTAGTGAGTTCATGGGGAACAAAAAGAAAAACCCACATCCCCAGTGAAAAACTACACCTTGATCCTTTTAATAGGGAAACAGTGGAACTGTTCTGTGCCATTTCAGTGTTTGCCAGCATCCTGTTAGAACTGGTTACTACTGAAATGCTGCTGGACACTGAATGTCCCATTGGTTTCTTGCTGAATCACCTCCAATGCAGTTCTGTTGAAGCACAAATTCTTACGATGTCAATGCAGGATTTTTGCTGCTGTGAAAGCTGTAGCAGTGTGCATACCTATGGAATGGAGTGTTGCAGTTCCTTCTAGTTTTCAGTGGAAGCTCTGAGCGATGCAGGCTGTTTGTGCAGGGACATCTGTCCTTACCTAATGCCATTCCCTGGGGCATTGTGTAGAACGGAGCTCATCAGTGCTATTTGGAATTAACTTCTATTAACTCAATGTTGGGGAAATACTATGGAAAACTATTTTGGTTTGGGTTTCCAAACACTGTTTGGTTTTTAGTTATCTGACCAAAAAAAAAAAAGGAGATTTTGAAACAATAAGGGAACAAATCTGCAAAAGACATCTGTAGGGCTGCTGACACAGCTTAGAGGTGATTAAATAACTTCCCGTTACATAAGGAATCTGAGATCTGAAAGCTGCTGCTAAATGACACTAAACTCAGCAATGCTATCATCCATTAATGAGGCTGTATTACAGATGCAATTGTTGTATTACCTTTCCAGGAAGTTCCCTTGCTACCAAACAATACTGTGCTGTCCTTTATCACATCCGAAGGTGCCACCACTTGTCCACACTGCCAAACCTACACTTGTTTTTGCAGCAGTCCAGCTGCAGGGAGTCAGAAACCACGTGCATATGTCTGGCTTTGTATGAGTCCGTTTCAGTTCATCTCACAGTTTCCGTGGTCCGAGGGAGGTTCATGTTCTATAAGAAACACCCAACACGGGGTCGCACAGAATGCTGGGTTACTGCCAAGTGCTCTTGTTGTCCACGATGCCGTTTGTGGTGTGGATGCTGTAACTAACAGGACGTGTCGCCGAAGCGCTGTCTTTTATTTTTCCTCTGTAGTTCTAACACAAGCCTTCAGCCAGCATCGTCTTATTTATAGATCCGATTGTGCCGTTTGTGCTGCACCAACCTGGGAGGCTCTGCGGATGCCAGACTGTGTCTGACGAGTTAATGTCTCTATTATTAATTTTAAGTGTTTTTCTGCTACTAAGAATTACTGATGCCATTAATCTTTTCTTCCTAG
Seq C2 exon
AAGTGGAAAGCTAAATAACCATTTAGAAGCTGCTATACACGAGGCCATGAGTGAGCTAGACAAAATGTCTGGGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012449:ENSGALT00000020351:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0085512=PWWP=FE(29.3=100)
A:
NA
C2:
PF0085512=PWWP=PD(22.0=69.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]