RnoINT0090112 @ rn6
Intron Retention
Gene
ENSRNOG00000027596 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:RGD Symbol;Acc:1562961]
Coordinates
chr3:33491316-33501000:+
Coord C1 exon
chr3:33491316-33491389
Coord A exon
chr3:33491390-33500924
Coord C2 exon
chr3:33500925-33501000
Length
9535 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
GTTGTTTTCATTAATTCCAGAAG
3' ss Score
6.17
Exon sequences
Seq C1 exon
GTGGAGCCCGAGAAGTTGAAGACACTCACAGAAGGTTTAGAAGCCTACAGCCGAGTCCGGAAAAGGAGCAGAAA
Seq A exon
GTAAGCGCTTTGGTTTTCTATTCTCTCTTCCCTGCAGAGACTGTGAAGTCTCAACCATGTGTTTCATGCAGTAAAAATTATTTGATATTTATTATCAGAAGACCATAACGGACACACCAAGTGTACTATTGCAGAAAGACGTTTTCCACCATGTAATTTGTCTGTATGGCTTGTAGGATTTGCTTCTTCATCCATTCCGTCCTTCCTCCATCTTCACCTCTTTGTAAGGTACTGGGGGGGGGGGGGTAGGGCATGCAATCACACACGCTAGCAGATTACTTACCAATCAAGGCAATGCCAGTGATGTCGCCACAATTAAGGACTGGAATATAAGTTCTCCTAGAACTATAACATGAAATTGAGCTTTGAACTATTATTATTCAGGTCCTTCTGGATTGTTATTTGATGAATAAAATATACAGACATGAAGGTAATATTATAGAGCATTTTATGATAGGGAAGTTTATGAATTGCTGCTGTTATCTCACGTTAAGGTAGAGAAACAAATGTAGTTCCACCTGTATACATAGAGGGTAGTTTTAAACCGTGTCACTGGCATGCCTGTTGAGTTCCCCATTTTCAAACAACCAAGGTCTGTTATATAGTAGGGCTGGCACGAGGATCCTTGCTACTGAGCCTGATGGCCAGAGCTGGAAACCCTGACCCACACAGTGGAAGAAGAAAATCGACTCCTGCAAGTTATACTCTGATCTCTAAGTGTGCACCAGGGTGTAGGTGAACGGTGCACGTAAACACACACAGCTAAATTTCTTTCTAAAAATAATCACACATTAATCTTTGTTCATTTGTAAAACCTTAAGACACAGCCTTAGTCTTTGCTGGTTTTGTTTCAATATTTTATTGTATTTTTTTATTTTATTTCATGTTATGTGATGCTGGGGATAGAACTCAAGAGTGTCCCAAATTCATGAATGCTCTACCACTTGCCAACCCTATTCACCATCCTCTTGAAATTACCAGCTTCGCTTACATGGTTGGGAGTAGACCCTAAAAGTTCCAGGGCCCTCTACACTGACGTGGCACTTCCCCTGCAAAGACTGGGTGGAGGACAGGACCAGTAAAATTAACATAAGCGCAAAAAGAAGGGGATACTGTGAAACACTGACGTGACACATTTATAGTGAGGCAGTGCTGAATCCTCAGTGGTGCCCTTGCTTTTGCTCTACCAGACTCCAAATGCTTCTGCAAGGGAAGCACACTAGATACTTGGGTTATCTGCAATAACCCAGTTCTGTATTTGGTAACACAGTAGTGACACTCACAAACACTGCGTTGAGGTGAACTGGATCTTTCCCCCGGCACCAAATTTTCAGTTAGGCCATTTCTGAGGGGGATGCATAACACAATTTTAAATTGTTTCTTTTTGAGCCAGTCTGCTGTTTGTGGTGAGTTGATATGGGACCATGTTTAATAATGTTCTTTATCATAAAAAAATCGAGTTTAGCACACAGATTGGAGCAAAAGAAGAAAACACAAAGCAGAAGTAATAAGATACAGCCTTACTTACTCTGCTGCTATCTAACTACACTGGCCGTCCTCGTGTACACCAGAGCAGTGTTTTACATTTTACAGGGCCGTTGTTTTCTTTTTGTGTTACTCTCCCAGTAACAAAATAATCTGTAATTACTGAGCCCATTTACAGAGGAGGACACTTAGACCCAAATATCTTGACTAATAAAATGGAAGTTATATAATGAATAAATGATGTTGAATCAAATCGCTTATTCACTTATTTATTCCCAATATTATCTATTCCTAATACAGAAAAAAAAGTGCCACCCACAGTGTTATTGTCCTTACAGACAGACCTTAAAACACACAATTAAAATGTGAAAATAACAAGGAAAGCGATATATGTAAGTATATATGGGAAGCACAGAGAAGTGACAGTTACCTCAGCAAAGATGCTTCTAGAGCTGCACATCCTGGCATGTACCTTTAGTCCCAGCGCTCAGGAGGCAGAGGCAGGTGGATCTCTGTGAGTTCAAGTCTGAACGCATCTGCATGGTGAGTTCCAGGACAGCCAGATTTAGGTAGAGAGACCCTGACTCAAAAGAAGAACAAATGGTTCCTAGAGATGACACCTAACCCAAACCTTACACGGTACCAAAATGGGGTGGGGTAGGGCAGTACTTAGATAAGGTCCGTATTGAATTTGGGGGAGCACTACACAGCACACTCCAAGAAGTAGAACTAGAAGGCTAAGCAGGAGCCAGCATATTGTCTGTATTGGAAGTATCCAGATCAAGCGGGCGGTCAGATCTTTTCACCTCGACTTGAATGTATAAGAGGAGGAATCTTAAGAAGACAGTCTTCGTGGTAGAAGATGATCTAGAAGCTCATGCCAGGACATGAGAAAAGATAAGAACCTAAGCAATGATAAGAACAGAAGGGAAGAAATGTGATCAGGAAATATTTAGGAGCCAAAATAAAGAAATCCTGCTGCTGATCAGAATAGGAAGGAGAGCAGTCACAGACCTGGGCTTGCATGGTGAGGAGAGGGTAGAAACACTGACTGACGGATATACCTTGTGTCTGTGGGGTAACTGGCAGACAAGTCTGAAATGGTATTCAATGTGTAAAAATGTTACACTCACACAGAGGTACAGATTAGTGCTCTAAGGATTCAATGCTGGGAAAGCACGACATTTACAAACATGGAAACGATGGAGTAAATGACTAGGAAGAGGAGAAGAACTGGTGGGAGGTTGGTTTTGTGTAGAAGACAAAGACTGAAGATGGCCACGGTGCTTTAGGCATGTAATCCAGCACTCTGAGAAGTTAAGGCAGGAGGTTCCCTATAAGCTCAAGACCAGCTCAAGCCACAAAGTGAGAAGCTGTCTCAAAATGAGAAAGAAAACAAAGACTGAAACAACCAACAGAGATATAATAAGACAAGAATGATTCTTCTCCATTGGATTGGGCAACTGGCGGCAACTGGCAGCCATTGTGGCCAGGGCAAAGGCTGGTTTCCAGTCTTTTTTTTGGGGGGGGGGGGATACAAAGTGCTCATGGTTTATGGAATGAAATGAGGAAGTAGAGAAAGGAGACGTTTACTTTCTATTCTTCCTGTGAAATTTTCCTGAAAAGCCACAATAAAGGTGGGGAGTTTTATGTTTAGGTTTTTTTTTTTTGGGGGGGGGGTGTCAGTTTGGGTTTGAGTTTGTTTATGAGTTTGTTTTGGAGGGTCACGTGCTTATGCCCGCATTATATGTAGACCATGTATGTGCCTGGTTCCCGTGGAGGTCAGAAGACGGAGTCAGATCCATTAGAACTGGAGTTACATAGCAACAGGAAAGCAACAGGAAACTCAAACCAGGTCCTCTGTAAGAGCGCTGAGCCATCTCACCAAAGCTACACTAGATTTTATAGTTACTTTCTCATTCCTGTGAGGAAAAATACCCTGACAAAAGCAACTCAAGGGGAAAGGTTTATTTTGGCTTGCAGTTCCAGAGGGACACACCCATCCTGATAGGGACACAGGCCGGTAAGGTTCCGTGGCAGGAACCGAAAGCCTGCTGGTGGCAACGCATCTGCACTCCGGAAACAGAATCAACAGGAAGTAGAGCCAGGTACTAAAACCTCGGGGCCTCTCCCTCAGTAGCCCGCTTACTACAGCAAGACTCCAGTTCCTAACAGCTAAACAATCTTCCGAAACAGCAGTACCAGCTTGGAACCAAGCGTTCAAATACATGAAATATTTTACATTCAAACCACAAAGTACTGCTGTAGACTAAGAAAAGGAAATCTGGGGGTTGGGGATTTGGCTCAGCGGTAGAGCGCTTGCCTAGCAAGCACAAGGCCCTGGGTTCGGTCCCCAGCTCTGAAAAAAAAGAACCAAAAAAAAAAAAAGAAAAGAAAAGGAAATCTGAGAAGGGAAAGTGTTCAGAGAGTTAAGACGGCTATTCTTGACCTACATACAACCTCCTTCTTTTGCAGCTTCGTAGCTGTCTACCTCTATGTATGTTGCTTAATCTTCAGCATTTCTAAAGTGTGCATATCAATTGCTACTTTCATATTGTACGTAGGTAATATAGAGAGCCTTCCATGCAGAATGTGACATACATTAGGTGAAATTAAAAGAAATAAATTATCCAATATTGTTTGCCAGTTGAAACATGTTACCATAATAAACTTTAAAATTTTATATAGTCATTTAAATCATTAATATATAAATATTTAATATTTATCAAATCATAAATATCATAAATGAATATCCTTAAGTTGTCATATCATTCACATCCTAATCATAAGAATTAGTAACATTTTAATACTTAATTCAGGTTAATCTTTTACTTAAAGAAGTGGCTCTATGAAGAAAATTCTAAAGCTTTTAAATGCATTATGTTTTCCAATTACCAGGGATCTAAGCCTTCTATGTGTACAAATTCTTTTGGTTACCTGACATCTTCTAAGGCTGGAAAATGGTAGATGATCAAAATGAGCCAGATATATTTTCACTTTAAAACTGAGAAAGGTCACCACACTTGAGTTATGGAACACATCAAAAGCAAGCTGGTAATAATTTGGAAGCTTCCTCCCTACTGGATAGCTTTCACAATGCCATATAGAAGATGCTATGTAGGCTACTAAGAGGAAATAGATAGTCAACACTCTTACCCAGCTGTGAGCCCGCCAAGCGACAAGAATGCCCAGCCTGGCAGTACAAACCCAAGAGTACAATAGTGGCATGGCTTTAGGGAGGAAACAACCACTTTTTCCCTGTAGATTTAAGGCTTGATGTATAAGACATAATTTATGCCTGATACTACTAACTGTATCAACAGTTCATGGCCGTCTAGGTCACAGGCCCTAACAGAGACTACTGCTGTTACTCTACTAAATGGACAGAGTAATAAACTGCCCCTAAGATCTTTATTGATTAATACATCTCTTGACCCTCATCAGAGAAACTTTTTTTAAGTAGGTGGTGAGTATAGAGACCCACAACTGACCAACATGTGAAGCATAAGAAGTGTTCAGTTCTAGATAAGATACTTGTATCACACCTTTCCTGTAAGGTCTGAGAATCATCTTAGAAGAGGGAGTGACAGAAAGAATGTACGGGCCAGAGGAAGTGAGCATCTTCTGAGAAGCAGGCCAGCCAACATCCCAGCATGGACAGGAGAGGGACTGGTGAAGTTCTGCCCCTAGATGAAGAGCAATTAGCAAGAGACAGCTGGTCTTCAGGGATGTGGCCCTTGAGAAGCTACCCATGATTTAGCCAATGTCTTATCCCCATGTACATATAGGCAGCAGTATGTACAGACTCAGAAGTGGACTCAGTGGACTTAGAAAAGGAGAAGGGGATACGAGGAAAAGGAAAGGAGAAGGAAGATAAAGGAGGAGAAGGAAGCAGAGGAGGAGGAAGCAGCAGTAGCAGCAGCTCGTGAAGTTGGGAGAGAAAAGTGATGGGGAAAGAGGAGAAATAGCAGAAGTTGTGGATTTTACCAAAATGAATCATATGCATATAAAACTTCCCAACATTAAAAAAGAATAAATTCAACTTAGCTTTTCTTAATTGTCTTGAATTTTCATGCTGCTTTACAGATTAGATTTTCAGAGCACGGAATTCTTGATTTTTCCATTTTTATCCAAATTTGTTGTGTTCTACCTGAAATGAGTCATAGTCTTACAAAATAATTCGTAGTCTCTCAGCTCACACATCTAGTATCATTCATAGATTTTTACCTGGCCTTTTTTTTCCTTTGTGGTTAGTGAGAATAAAGAGAGTGTGTGACAATATAGTCAAAGGAGATGAGAAGTAGCAATTATCTCCATTAATAACTAGAAATGTGATTACATGAGCATCTCTTACATAATCAATTAGGGTTTAGAGTGTCCATTAGTAAAAATGTTTATTATTAAATACCAGCGGGAAATAGAAAATACTAGCAGAGACTCCATGGGGGGCCTCTCAAGAGTGGGAAACCAAAATTTGACTCATTGTTCCCTTTAGGGACTCATGGAGTTTTCTCTTCCTGAGCTCACTTGTCCCTGGCAGGAATACTGGGGAAACCATTGTGTAGACGTGACGGCTGGAAAAATGTCTCTGCATCTTGATTCTCATGATGTCCTCAAATAATTTCATGTTCCACATCTGTGTATTCTCCTTCCAAAAGTAGTCATTTCTCCATCAGTACCTGTTTAAATTTACTATAAACACGGCATTGTGCTACTTAGTCTAAATTAACTTTGATTTTTTATTTTGTTTGTTTATGGGAAGGGGCACATGCACATGTCCTGGCAAATGTGTGGCCAGAAGACAACTTGTGTGGGTTGGTTCTATTCTTTTCCACATTGGTTTTGGGACGCAAACTGAGGTGATCAGACTTTGACAGCAAGCACCTTTGCACACTGAGCCATTTCACCAGCCCATATTGCATGTGTTTTTACAAACATTGTTTTTTAATAATTGGGTGGACAATGAATGCCTAACATTCTAACTTAAGTAATATTATTAAATCACTTTTATAATTTCATCATGTTACTGTGTTCTTCATAGGAAAAAATATGACTCTTACCTTGGAAAGTTATTTATAGTTAAATATATATATACATATATATATATACTTTGAATTACGTAATGATAAAGGATTTCACCCTTTCACTTAAAAAATTTATGAAGTATTATATACAAATAGTTGTCATAATACCTACTTCATAAGATTGCTCTGAAGGTTAAATGAGACAACACCTAAAGAGCTAACACAATTCTTGCAAATATAAGTCTTCCAATAATAGTAAGTACTTTTTCTCTTAAAATACAAGACAGCTGGCAAATCAGCTCTCTGGCTTTGCAAGGATGCTTTCTGAAGTCAGCCCTGGGTTCCACATGGTTGGAGAGAACCAACTCCCATAATCTGTCCTTCGATCTCAACACCATAACTTGTACATTTGCACACATAAATAAATGAATAAATAAATAATTGTTTATTTATAAATATGTATGTATATAAACACATGGCTTGTATACTCATATATAAATAAATAAATATAAATATATTTATATCTTTTAAAATATTCAAGGGAAGAAAGCAAGGTTCCCTATGGGCTTTTTTAATGAAATATTTTATCTTTTTTTTAAGCTATATTGAGCTTTTTAGGTGTAGTCCACTTTAATCCATAAAATATTATAATCAAAAAGCATAAAAAATGAAATATCCTTGAAACGTAAGTGCATATGGGGACTGGAGGAATAGTTCCATGGTTAAGAGCACTGGCTGCTCTTCCAGAGGACTAAGGCTCAATTCCTAACACCTACACAGGAGCTAACAACCATCTGTAAATCCAGTCCCAGGGGATCCAACACTTCCTTTTGGCCTCTGTGGTTACCAGGCATGTGCATGGTGTACAGACTTACTTGTAATCAAGACACTCATACACATAAGTACATTTTTTTTAATTTTTCAAAAAAAAATAAATGCCTATTTCTCAGTACAAAAGACAGATGAAAGATAAACTTACTGATTGTGCTGCAGGAAGTGCGATATTGGGGATGATTTTATCAGGATTCTCACCATAGCCAAACATGGATGGTTCCACACACCTAGGCCACCCAGGGTCACACTTAGCAAACTCCTCACTGGAAAAACAACTCAGAGTGACTCTACAAGATGCAGGGCTCCCTGACCCTGGAATGGCAGGAGGTATATGTGTGAAAATGATATGCACTGGGGAGAAAGAATTGAAAAACTTATGTCAACTACAATGGTGCCCAAGATAAAGGTCCAGGAGTACTGACTAGTATGCATGACTTTCATCCTAGCACAGAGGCAGAGGATCCTGAGTTAATTCCAGGCAAGACCCTGTCTCAAAATAGTGGTGATGGTGGGTGGTGGTGGGTGGTGGTGGTGGTGGGTGGTGGTGGTGGTGGTGATGATATGGGAGTGGAGAAAGATGAATTGTGCATCATGACAGCTTTTTATATGTGTAAGGTATACATAGAGCAATTCTGTCCATGGTGTATCATATAAAACAGGAGCATAAGGAGCCTTTGGGACTGAGTGTTGACTGAGAATAGTTACCAAGTAGAAATACTAGATTTTCTCTTTGATAAAAAAATACTTAAAAGAACATGTACTTTGTTAACATCCCATTCTGGAGGAGTGGGTATGTTGGGGTTATTTTCTTGCTGAACTACTCTGCATTTTAACTTTTTTTAAATTAGTGGAGAGTAGGTAGATAGATGGTTAAGACAGACAGACAGACAGACAGACAGACAGACACCCACACACACACACACCACACACACACACACACAAACACACACACACATAGAGAGAAGGATAGGCCAGATCATTAAGAGCAGAGAGTGCTGGAGGAAATTGTTGGTTATGTCCTTTTACTGGTGTCAGGTTAGTAGGTTATCCTTCCTTCCAGTTGAACTGACTTAAACCACATCTGCTTTAACGAGATATAGGACCGTTTATGTTTCCACTTTTAGACAAAGCCACTTAGCAAATAAGCATTCATGGTGTGCCTCGAAGTATAATACTCAAAGGTGGATAGTTAAGTGTCTGTAAAACGTAGAAAACAACCAAGTATAGGAATGTCAGGTCATTGTGTACAGAGGATAGAGCCTAAGGAACACTGTGGTAAGTGGGAAAATGTCACCTAAAGGCATTCCACTACAGTTAAAGTGTGTCTTCTCCCACAGCTGCAAATTTCCGATCTCCATGTAGACGCTGAGATAGGACTTAACTCTTGGGAAGCCTAGCAGTTGATAGCTTTCTGTAGGAGTTTGCTTCAGCCAGTTCCCTATCAACTGTCCTGAAGGGATGAATGCCAGTGCATATTCAGAAGACTGAGGAGTAAGATTTATATATGTAGACGAGGAGAGATAAGGTAGGGTAGGCAGAGACTGTATAGCCACAGAAAATTGACTGGCTGTAGTAACAGGCAGCTTTTAAAATGGCACCTGTGGTATGTTATTCACAGAATGCTGAGCGGAGAGCAGTAGTCAGAGGCTTCTAAGACAATCATTGTGTGTCTGTTGAAAAGATCACGTCATTTTGGTTTAAGGGGAAATGTGGCAAAGCCTGCCTCCTGGCCTCAGGTGTAACAAAGTAATAAGCCTTTTCTTACCCAGGCACCAAAATTTAGCTTTCTTTTCACTTCTACATAGCTGACATGATCCAGAAAGGGTGGAGGGAGCTCCCTAGTGGCCAGAGCTTGCAGTTCATCCCCGGTGTCCTAGCTACAGCCTGCTTTCTGGTAGGAAGCACAGCTTTGGAGGCCATAGAGCTCCTGAACCAGCCTTCTTCATCAAAATGCAGAAGAGACACAGTGGAGCAGGCTTCCTGTCTTAACCTCGGCAATGGCGTTACTTTAATCGTTAGTGCTCGGTGGTGGGAACCCCAGAGTGATGCTTTATCGCCTGAACTTTTCAAATGTGAATCTAGATTGACTTTCTCTGGTAGAATTGATATTTTTGTCTTCTGGCTAGGGAATTAAATTGAGGCTTTTGTTTCTTTAATTTGTTAATTTGGCATGTTGTTTTCATTAATTCCAG
Seq C2 exon
AAGTGGGAAGCTAAATAACCATTTAGAAGCTGCTATTCACGAGGCCATGAGCGAACTGGACAAAATGTCTGGGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027596:ENSRNOT00000034632:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.907 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0085512=PWWP=FE(29.3=100)
A:
NA
C2:
PF0085512=PWWP=PD(22.0=69.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]