GgaINT0050079 @ galGal4
Intron Retention
Gene
ENSGALG00000012449 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr7:34193566-34197372:+
Coord C1 exon
chr7:34193566-34193639
Coord A exon
chr7:34193640-34197269
Coord C2 exon
chr7:34197270-34197372
Length
3630 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
CATTAATCTTTTCTTCCTAGAAG
3' ss Score
6.72
Exon sequences
Seq C1 exon
GTGGAGCCAGAGAAGTTGAAGACACTAACAGAAGGTCTAGAAGCTTACAACCGAGCCAGGAAAAGGAACAGAAA
Seq A exon
GTAAGTGTGCTCATTTGCTTACCAGTGGGGTGAATAATCACATGCTTTTGCTTCCAGGGACTCTCCTTTTGGGGACCCTTGCAGATCTGCCAAACTGAAAAGTTAATTTTCTGAATTCCTTGCGTTGGTTGTGATAATCATCCAAGATCTTTGATATCTGCATTTTTATTGCATCTTCTGATATTTACTGTAGCCTTTGTAAAATGTCAGCCTGCTTGTTTGAGCTTTCATGTGAGGGATTCTAATTTACAGCCAAAAAAAGTTATTACATCCAAACTACTCTGACCAAATCCAGTTTTTCACAAGATCTGCTCTTCTTATCTCTTCCCTCTCCCTCTCTTGGCTGCTGCAGCAGGCAGAGCCCGCCTGTATTCGGATAAGTTCTGTTGTTCCCCATTGCAGAGGAGCTCCCTGCAGTGGGTGAGGGCTGGCAGCGGTTAGCCGGGCAGCAGCTCCCATGCAGTCACACACCTCTGGCCTGGTCGGTTTCCTCTCACCCTTTGGCCTTCATTTACAAACATGCAAGGGTAGAAAGACTGGGAAACACGAAGAGGTGAAGCATAAGCTTACACAGAAAGAGGAAAGTGAAATTGGCTGTAGGAGAAAAAAAATTCTTGACAGCTGTCAAAGGACAAGAGTAGAGATGGGGGTTATCCTGGGATGGTGGCATTTATTTACTGTTGTGGTGAGAACGCATTACTTTGTGAGAACTCAGCCAGTTTGCAGCGCTGCCTTCAGAACAATAAACACAGACTTTCAGGAATTAAATAATTATTTGCCCTCAGCTCCTTTTAAGGTGTAAGCTTTTCCTCTATTTATATGTCAAGCAGTGCTTAGGAGAAATACTTCTAATGCCAGCGAGACAATGTTGAGTTTTTTTCAGTGCCATCCTCACAACATCTGAGGGCAGTCTGAGGGCAAGCGCTGAGCAGCCAGGAGGGCTGCTGGCACCCCCAGCTATTGCTGCTCCCTGAAGCAAAATACACGACTTGAGGAAGGTGGCAGCAGAAGCACATGGAAAGAGGAGTTGAAGCTGGAATAAGCAGTGCAATTTAGGAAGAGCTCCCGTCTTATGGTTTGCAGTTGCATATCTAGCAGATTGCAGGGGTTGTCCAGAACTGTGCTGAACCCAATCGCCTTTTTGTGGCGTTACTGGCTCTGCATCATTGCTCGCACATTAGGAAACAGCAGCTGTCAGGTACCCCAGCAGCGTGGGGCCCCAGGTACCCCTTTTCACAGGGTTACCTCACAGCCCATACAGGTTTTTCTCCATATTTCTACTTCTACATATTTTATGTTTCAAATGTTTTACTCTTTCTTTGTGGACCAGAGGGCAGCTCCTTCTCTTTGACCTGCGCTCTGTGCTGAATGTTTCTGAAACAGTTTTTGACCTCTTTATGGTCTGTTTTGTTGCGTGTGCCTCTGGTTCCACACAAGTCCACAATTTTGGAACATCAACCATTAGATTTAATTGTTATCCATGGCATACAGCTCTCTTTTTGCTTCTGCCTGGATAAGTACCCAGCACATACACATACCAGGTACTGACATCAAGTTGGACGCTTCTGTAATAGAAAAGACAGGCAAACAAGTCCAAGAGAATATGGACTAGCAGCACATCAGTTCAGTGTCTTTTGCAGAGCAAGGTTAACATCCAGATCCTCAAAATGATATTTCATTCTTTGTGTTCCTACCATCAGGAAAAAACCCTGCCTAGAAGGAACACTTTCTTCTCCAAAGAGCAGTCAGGCAGCAGCACAGCTGCCCATGGAGTGGGGGATCACCATCCCGGGGGGTGTCCCAGAGCTGTGGGGATGTGGCACTGAGGGACGTGGGCAGCGGGCGATGGGCTGGGCTTGGGGATCCTAGAGGTCATTTCCAATCCTAATGATGCTGTGAAGACTTTAAGCTCTTCGCCTCAAATGCTGTGGTGGTTGCAGGTTGTTTCAGATCACCAACAACCTGTTGCTGATGTTCATCTGATGTCAGGTTCTCTGGTTGTCAGGATGTTGCCTGCTGTAAATGATGTCCCAGTGATGGGCCCTTCTGAAACATTGGTTTGCTTGAGGGCAATTCATCACCTTCATAGTAAAGTGTTGCTATTAAAAACACATAGCAGCAGTGTCTTAAGACTGCACATCATCGTTTGTATATCAAATACTTTCAAACGGCTGCTTGGGCTACTGGCAGTAATTACATAAGCATCTGGTGGGGGTGGAAAAGACCTCAAGCCAAGCTCCTACCCAAAGGCAACACATGCAGAAATCAACCTGCTATGTAATATTTCTTTGGATTATTTTAATTGCTACTGCTAGTGACGGGGAACGTCAGCCTACGTGAAGTCACGTCAATCATTTTTGGCTTTGCCATACTTTCTAGTGAGTTCATGGGGAACAAAAAGAAAAACCCACATCCCCAGTGAAAAACTACACCTTGATCCTTTTAATAGGGAAACAGTGGAACTGTTCTGTGCCATTTCAGTGTTTGCCAGCATCCTGTTAGAACTGGTTACTACTGAAATGCTGCTGGACACTGAATGTCCCATTGGTTTCTTGCTGAATCACCTCCAATGCAGTTCTGTTGAAGCACAAATTCTTACGATGTCAATGCAGGATTTTTGCTGCTGTGAAAGCTGTAGCAGTGTGCATACCTATGGAATGGAGTGTTGCAGTTCCTTCTAGTTTTCAGTGGAAGCTCTGAGCGATGCAGGCTGTTTGTGCAGGGACATCTGTCCTTACCTAATGCCATTCCCTGGGGCATTGTGTAGAACGGAGCTCATCAGTGCTATTTGGAATTAACTTCTATTAACTCAATGTTGGGGAAATACTATGGAAAACTATTTTGGTTTGGGTTTCCAAACACTGTTTGGTTTTTAGTTATCTGACCAAAAAAAAAAAAGGAGATTTTGAAACAATAAGGGAACAAATCTGCAAAAGACATCTGTAGGGCTGCTGACACAGCTTAGAGGTGATTAAATAACTTCCCGTTACATAAGGAATCTGAGATCTGAAAGCTGCTGCTAAATGACACTAAACTCAGCAATGCTATCATCCATTAATGAGGCTGTATTACAGATGCAATTGTTGTATTACCTTTCCAGGAAGTTCCCTTGCTACCAAACAATACTGTGCTGTCCTTTATCACATCCGAAGGTGCCACCACTTGTCCACACTGCCAAACCTACACTTGTTTTTGCAGCAGTCCAGCTGCAGGGAGTCAGAAACCACGTGCATATGTCTGGCTTTGTATGAGTCCGTTTCAGTTCATCTCACAGTTTCCGTGGTCCGAGGGAGGTTCATGTTCTATAAGAAACACCCAACACGGGGTCGCACAGAATGCTGGGTTACTGCCAAGTGCTCTTGTTGTCCACGATGCCGTTTGTGGTGTGGATGCTGTAACTAACAGGACGTGTCGCCGAAGCGCTGTCTTTTATTTTTCCTCTGTAGTTCTAACACAAGCCTTCAGCCAGCATCGTCTTATTTATAGATCCGATTGTGCCGTTTGTGCTGCACCAACCTGGGAGGCTCTGCGGATGCCAGACTGTGTCTGACGAGTTAATGTCTCTATTATTAATTTTAAGTGTTTTTCTGCTACTAAGAATTACTGATGCCATTAATCTTTTCTTCCTAG
Seq C2 exon
AAGTGGAAAGCTAAATAACCATTTAGAAGCTGCTATACACGAGGCCATGAGTGAGCTAGACAAAATGTCTGGGAATGTAAGTTTCTTTTCATGTTGGCAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012449:ENSGALT00000020351:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.920 A=NA C2=0.529
Domain overlap (PFAM):
C1:
PF0085512=PWWP=FE(29.3=100)
A:
NA
C2:
PF0085512=PWWP=PD(22.0=51.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]