GgaINT0050080 @ galGal3
Intron Retention
Gene
ENSGALG00000012449 | MBD5
Description
NA
Coordinates
chr7:36324873-36327741:+
Coord C1 exon
chr7:36324873-36324948
Coord A exon
chr7:36324949-36327423
Coord C2 exon
chr7:36327424-36327741
Length
2475 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
GTGACTGTCCTTATTTCTAGGTC
3' ss Score
10.89
Exon sequences
Seq C1 exon
AAGTGGAAAGCTAAATAACCATTTAGAAGCTGCTATACACGAGGCCATGAGTGAGCTAGACAAAATGTCTGGGAAT
Seq A exon
GTAAGTTTCTTTTCATGTTGGCAATAATCATGTCCCTTTTCCCTGTTTGTATGTGTGTGTCCGCTGAGGGCTGGGATTGCTGGTTGGGGTTCCTTTCTAAGAGGAATGTTGTTTTCATTTGGTAAAATGATGTGGAGTTGTCAATATTTTTCTCGCCTTTCAAACTGTTTGCAAATGTCTGATCCTTCTGAGAAATGGGGAAAAGGTGCATCCTTCAGTGGTGATGCAGTTGCGTTGCTTTTTAAGAGCTGGATGCCTGCATGCAGTTCCACGTGCAGCTGACGGCTCCTGTGTGCCATGCATGCTGTGGGGCTGACTCTGCCTGCTGACAAATCAGCCTCATTCATTGAAACCACACTTAAAAACGTTGTTCTTTTGCATATCAAACCCTCTGAATAACATTTTCCTTATGTTGACATGGAAGCTGTCCTGGCAGGTAAGTTAGAGTCTTCCTGACATCACGGCCAGCAGAACTCTTTTAAAAACATTCACTCTGTTACTGTATAAGATCAATAAATATGATAAAATTTGGCTCACGTAATCATAGAATCGTGTGTATAATCACAGAATCATAGAATCACAGCATGGCCTGGGTTGAAAAGGACCACAATGCTCATCCAGTTCCAACCCCCCGCTATGTGCAGGGTCGCCAACCAGCAGACCAGGCTGCCCAGAGCCACATCCAGCACAATGTGCTCATCTTCATATTTCAGCCATGCACGCAGTGCCTTTAAAACACACACAGAAAGGCAGAGAAGTGTATTGCAGGACAGCCTCCCCAATCTTTAGCATCGGTAATTCTTATGATTATTAATTTATACATTGTTTGAATACAGAATAATTTCTTTCTCCTGACAGCCGGCACGCAGCGCTGAGATGCGTGTACACAGACATACTTGGGAGAATGAGTAAGGCTTCACGGGAGCTGCTGGAGTACATAAAAGGAAATCTGCTCTGAACTGCAGACGTGGAGCTGACTTCAGAACCACCACGAAATATTAAATGAATTATTCAGCAGCTCTTAGTGGTTGCCATAAGTAATAACAAATCCAAACCTTTTGGTGAAACTTGGGAATTTTATGAAACAAGATTGAGTTTTGATGTAAAAGCCGGACCTGACTGCGGGTGTGGTGCAAACAGATGGGGCTGCATACTGCACGTGCATCTCTACTGCCAGTTATGGCAGCACTTAAATGCTCAGACACCAACCTGCTGGTGCCAGTTACCTTTCCTTCATATCTCAATCCAGCAGTGCTATAAAATTATAAGTGATACACATTTGATTGTGATACAGACTGGCTCAGGTGAAGGCACTGCAGCGGGACGCGCTGATGGATGCTTCTGTCATGCCGACAAGCTGCTCCACCAGCCTGCGTGTCACTGCTTAGTCTTGATTTATATTTTAATTATCTGGTCCCAAAATTCCCAATCAGGGTTTATTTCCATGAAAATGATGATCGTTAGAAACAATCATAGGGAATCAATGGTTCCCTTTCTGGTGACTTGCACTTTTTTCAGCTCCTGCAGCTCAGTCATCAGTTACACTTTCAGTGTGCAAACAGGATAATGAGCTTAAATCATCATTTCTGCTGGGAAGAGCCAATAAATGAGCAACGAATGGTCGTGGTCTGAAGGCGTTCAGAAGGGAGCCAGGAGGTGACTGACAGCACTGCTTGGGGATGTGCAGCCTCTGCCCGGCTGTGGCCAGGAGCTGCGGCCGCCGGCAGATGGTGATGGCACTCCATGGCCCTTCTGGCAGCGCTGTGCTCGTGCTGAGCGCGCAGCGGTGCTTCATCCAGCACCGAGCTCAGAGTATTGCACGGAGTGATGAGCGGGAATCAGCTTGCTAATCAGAGCTCCTTCCTTAGTGATGCTACTGCCATCCTGAGTTTGATAGATTTTTTTTCACGTTACCAGTATTTTCTCAACGTATAATTTTTAATTAATTGCTGCTGGCAGAATGATTGATAAAGATTTGTCTCACAGAATGTGGTGTAACTGCAGTTTCAGTTCGGTTGGCACTTTCTCTGAGGTCACAGAGCTTTGGGGCACACAACTGTGGCAGCCGGGAGGTGCCCCCCAGGGCTGTGAAGTTGTGGAACTCTGTGTCCATGTGAACGTGAAGTGCTGAGAGCCACTGTGATGGCCTCGAGTTGCACCGGGGAGGGTCAGGTTGGGTATGAGGAACAATTCCTTCCCCAAAGAGCAGTCAGGCAGTGGCACAGCTGCCCAGGAAGTGGGGGATCACCATCCCTGGGGGTGTCCCAGAGCCGTGGGGATGTGGCACTGAGGGACGTGGGCAGTGGGCATGGGGGGGTGGGTGGGGGTGGACGTGGAGATCTGAGAGGGCTTTTCCAGCCTTAATGATTCCATGAGGGCAGCTCAGCAGCATCTCAGCAGTCCGTGGCTCGTTTGCTTTTGGCTGGTTTCTCTGACCAATCTTCTTCCCTAACCTGTGACTGTCCTTATTTCTAG
Seq C2 exon
GTCCACCAAATCCCACAGGGAGACAGACAAGTGAAGCCTCCAAAACCCAAGAGGAGGAAGATCTCTAGATAACATTGAATGTCTTTGTTACTGGTCCAGTACTTATCAAAACGAACGTGCACATAAGTCTGTATGTAGGTATTGATATAGACGTGGTTATATCAATATTTATATGAAGACGGCCGCCGCCGCGGGGTGCTACGTGGAGTGTGGTACAGTGGTGTGGATGATCAGGAGGGAGAGCGGTTGCTGGAAAAGCCAATCAGAAATCCGGGAAGGTCGCAGTAACCATGTCAGATGATTACTGAGGTTTTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012449:ENSGALT00000020351:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0085512=PWWP=PD(22.0=69.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]